Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30157
         (370 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    27   1.2  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    24   6.5  
SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo...    24   6.5  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    24   8.6  

>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -1

Query: 355 SRIDKDEHFLREIKVPSECNFVLNSNL 275
           S I  + +FLR+++V  ECN+ L+ +L
Sbjct: 166 SGISPNANFLRQLRVYFECNYQLDRSL 192


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 126 LIEYIQENMNNVSLKIRMSDNDDIIMY 206
           L EY+  N + +S  + + +N+D  +Y
Sbjct: 118 LYEYVDGNSDGISFVLNLENNNDTSVY 144


>SPBC16A3.06 |||tRNA specific adenosine deaminase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 319 IKVPSECNFVLNSNLCIHIFL 257
           ++V     F LNSNL IH+++
Sbjct: 119 LEVADNGKFTLNSNLLIHLYV 139


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 364 YLYSRIDKDEHFLREIKVPSE 302
           +LYS  DK ++ L   KVP E
Sbjct: 883 FLYSNTDKHKNLLAFAKVPQE 903


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,269,299
Number of Sequences: 5004
Number of extensions: 22538
Number of successful extensions: 60
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)