Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30157
         (370 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50820| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_58179| Best HMM Match : zf-C2H2 (HMM E-Value=4.7e-19)               27   4.8  
SB_32781| Best HMM Match : GATase_2 (HMM E-Value=1.7e-39)              27   6.3  
SB_42635| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=1.6)             26   8.3  
SB_3879| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.3  

>SB_50820| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 358 YSRIDKDEHFLREIKVPSECNFVLNSNLCIHIFLL 254
           ++ +  +EH L  I+ P E N  L  N+  HI+LL
Sbjct: 19  FAHVIGNEHLLYSIENPLEVNITLPKNIQDHIYLL 53


>SB_58179| Best HMM Match : zf-C2H2 (HMM E-Value=4.7e-19)
          Length = 249

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -1

Query: 139 IYSIRYTARYILSDIYKIFEYLQIVFFFKYFIRKLKIDI 23
           +YS R+ AR  L+ I+   E  +++F F   +RKL+  I
Sbjct: 52  LYSQRFRARRNLTKIFNCPETSELLFAFTPVLRKLRDSI 90


>SB_32781| Best HMM Match : GATase_2 (HMM E-Value=1.7e-39)
          Length = 563

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 42  RIKYLKKKTICKYSKILYMSDKI 110
           RIKYL K+T C YS  +   D +
Sbjct: 171 RIKYLMKQTQCAYSLAIMNKDSV 193


>SB_42635| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=1.6)
          Length = 409

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 162 KHYSYFLEYIQ*GIPLAISYLTYIKF 85
           +HYS + +Y+   + L   YLTY ++
Sbjct: 111 QHYSTYFQYVTSAMSLTQHYLTYFQY 136


>SB_3879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 693

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 12 DYLIMSIFNLRIKYLKKKTIC 74
          D++++S+FNLR+K    K +C
Sbjct: 18 DHILLSVFNLRLKPSTVKGLC 38


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,404,104
Number of Sequences: 59808
Number of extensions: 135982
Number of successful extensions: 289
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)