Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30156
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0545 - 4756266-4757510 31 0.55
09_01_0102 + 1582793-1582898,1582988-1583093,1584115-1584172,158... 29 1.7
12_01_0977 - 9900073-9900521,9900594-9900698,9900770-9900959,990... 29 2.2
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773... 28 5.1
03_02_0080 + 5498638-5498699,5499121-5499190,5499551-5500711,550... 27 6.8
03_01_0555 + 4132630-4132923,4133514-4133771,4134125-4134249,413... 27 6.8
02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,329... 27 6.8
>05_01_0545 - 4756266-4757510
Length = 414
Score = 31.1 bits (67), Expect = 0.55
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 356 CKPS**YLRWRRQCS*VYRTSPR*CASFQ-QLYVPAP 249
C P+ Y R RQC+ Y P CA+FQ + +VP+P
Sbjct: 346 CLPNRPYQRTPRQCAAFYAAPPVDCAAFQCKPFVPSP 382
>09_01_0102 +
1582793-1582898,1582988-1583093,1584115-1584172,
1584676-1584745,1585132-1585197,1586374-1586429,
1587992-1588078,1588819-1589139,1589827-1589946,
1590747-1590881,1591529-1591605,1591681-1591756,
1592800-1592874,1592971-1593075,1593299-1593374,
1594482-1594617,1594702-1594804,1595186-1595298,
1596907-1597111,1597173-1597301,1597403-1597517,
1597710-1597795,1599108-1599203,1599615-1599751,
1600374-1600476,1601809-1601888,1602013-1602091,
1602241-1602298,1602489-1602586,1602673-1602767,
1602861-1602918
Length = 1074
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 347 RVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNXQVNDLRGK 478
R+C E+IA +E E D+E I+ ++ ++ N + D+ K
Sbjct: 649 RLCTSLGEKIAEMESEIADMERIISQRTRDMKKPNDKREDIELK 692
>12_01_0977 -
9900073-9900521,9900594-9900698,9900770-9900959,
9901035-9901093,9901297-9901688,9901770-9902059,
9902146-9903030
Length = 789
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 344 KRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNXQVNDLR 472
K+ K+ ERIA+L+D ++L K + ++ + Q+ LR
Sbjct: 580 KKTEKELRERIAQLQDSNYELSGSSKAQAARMAQMEKQIEALR 622
>10_08_0829 -
20871810-20872011,20873226-20873359,20873480-20877313,
20878057-20878177,20878414-20878451,20879096-20879218,
20879308-20879505,20880270-20880356
Length = 1578
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +2
Query: 353 CKDYHERIARLEDEKFDLEYIVKRKDMEISDLNXQVNDLRGKFVKXHPXE 502
C D ++ E +LE +++ E+ D +++DLR K H E
Sbjct: 602 CADLELKLISFRSESSELEEKLQKSQEELKDRILELSDLRDKLSGFHALE 651
>03_02_0080 +
5498638-5498699,5499121-5499190,5499551-5500711,
5500940-5501029,5501147-5501464
Length = 566
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 258 NVKLLKGGASSRRGAVNLRTLTTPT 332
N K KGGAS+ + A + RT T PT
Sbjct: 504 NGKAKKGGASTPKKAAHRRTTTVPT 528
>03_01_0555 +
4132630-4132923,4133514-4133771,4134125-4134249,
4134789-4134990,4135172-4135297,4135404-4135660,
4135968-4136075,4136142-4136310,4136378-4136543,
4136967-4136998,4137256-4137579,4137683-4137757,
4138093-4138162,4138228-4138385,4138872-4139021
Length = 837
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 335 DTIKRVCKDYHERIARLEDEKFDLEYIV 418
+T ++C+ Y E A + KFDL YIV
Sbjct: 643 ETGPKICQKYIECPALFQGRKFDLRYIV 670
>02_01_0459 +
3298780-3298788,3298900-3299037,3299174-3299207,
3299528-3299531,3299814-3299949,3300034-3300090,
3301689-3301786,3301876-3301947,3302056-3302228,
3302552-3302698,3303113-3303336,3305300-3305306,
3305634-3305800,3306033-3306068,3306787-3307004,
3307115-3307172,3307761-3307842,3308045-3308207,
3308594-3308598,3308700-3308885,3308969-3309548,
3309642-3309774,3309880-3309948,3310184-3310395,
3310654-3310891,3311228-3311386,3311501-3311926,
3312010-3312447,3312593-3312712,3312784-3313266,
3313471-3314009,3314178-3314667,3314836-3314904,
3315735-3315839,3315940-3316158,3316254-3316508,
3316602-3316651,3317175-3317284,3317372-3317454,
3317560-3317772,3317870-3318040
Length = 2391
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 323 DANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNXQVNDL 469
D ED K++ K + L D+K +E I+ K E+ ++ +VNDL
Sbjct: 99 DEKEDHEKQL-KQIRLDMEALRDDKTQMEVILDEKIDEVRKISSKVNDL 146
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,985,181
Number of Sequences: 37544
Number of extensions: 118672
Number of successful extensions: 356
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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