Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30156
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.060
SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.98 
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)        29   3.0  
SB_1307| Best HMM Match : Filament (HMM E-Value=0.13)                  29   3.0  
SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   4.0  
SB_20508| Best HMM Match : Filament (HMM E-Value=0.037)                28   4.0  
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)    28   5.3  
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              27   6.9  

>SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1411

 Score = 34.3 bits (75), Expect = 0.060
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +2

Query: 335 DTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNXQVNDLRGK 478
           D +++  K    +  +LE +  DL+  +KRKD+ I+DLN  V D + K
Sbjct: 400 DELRKTKKKMQVQYEKLEHQLDDLKVQLKRKDVVIADLNKVVEDYKRK 447


>SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 828

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 332 EDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNXQV 460
           ED + R  +   +RI RLE    DL+ + +R     SD+N +V
Sbjct: 22  EDLMTRRFRGLEDRIGRLESTVSDLQLLQRRNGRFFSDINTRV 64


>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
          Length = 3071

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +2

Query: 386  EDEKFD--LEYIVKRKDMEISDLNXQVNDLRGKFVK 487
            ++EKF   L  ++ RKD  I +LN ++  L+G + K
Sbjct: 997  QNEKFSETLNSVISRKDKAIDELNAKIRHLQGDYDK 1032


>SB_1307| Best HMM Match : Filament (HMM E-Value=0.13)
          Length = 916

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +2

Query: 332 EDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNXQVNDLRGKF 481
           E + +R+ ++Y E+IA  ED+   L   + R + E+  L  + N+L G+F
Sbjct: 146 ESSKERLQREYEEKIA-YEDKFNQLSNTLARYENELMSLRLENNELVGQF 194


>SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1081

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/24 (41%), Positives = 20/24 (83%)
 Frame = +2

Query: 323 DANEDTIKRVCKDYHERIARLEDE 394
           + +E+ +++V +DY E+IARL++E
Sbjct: 144 EPDEEQLEQVRRDYEEQIARLQEE 167


>SB_20508| Best HMM Match : Filament (HMM E-Value=0.037)
          Length = 722

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 311 KNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDL 448
           + +  +NE  + RV  D  E  + L+ +K DLE I ++ +    +L
Sbjct: 51  EELQTSNESELMRVRSDLEEMTSLLQSKKVDLEKIKEQNEKAAKEL 96


>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
          Length = 4160

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
 Frame = +2

Query: 332  EDTIKRVCKDYHERIARLE---DEKFDLEYIVKRKDMEISDLNXQVNDL 469
            ED +++V K     +A L+   +EK D E +++   + +++LN Q+ DL
Sbjct: 1901 EDELEKVRKKEVSLLATLDTLREEKKDQEQMLQDNGIRLAELNTQIQDL 1949



 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +2

Query: 323  DANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNXQVNDLR 472
            D  E TIK + ++ +    R +DE  DL   V +K+ E   L+ Q++DLR
Sbjct: 3021 DIAESTIKNIKQEKN----RFQDEVNDLHGKVSQKNSENELLHAQLDDLR 3066


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/54 (22%), Positives = 30/54 (55%)
 Frame = +2

Query: 326  ANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNXQVNDLRGKFVK 487
            A+++ I+   +    ++++++DE  +L+    R+  EI DL  ++N+L     +
Sbjct: 1352 ASKEYIEGQLESLKAQMSKIKDENENLKESDARRQQEILDLENRINELENMLAR 1405


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,139,692
Number of Sequences: 59808
Number of extensions: 136809
Number of successful extensions: 416
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)