Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30151
         (516 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O93601 Cluster: Apolipoprotein AIV; n=1; Gallus gallus|...    34   1.7  
UniRef50_Q6FD43 Cluster: Esterase; n=4; Acinetobacter|Rep: Ester...    34   1.7  

>UniRef50_O93601 Cluster: Apolipoprotein AIV; n=1; Gallus
           gallus|Rep: Apolipoprotein AIV - Gallus gallus (Chicken)
          Length = 366

 Score = 34.3 bits (75), Expect = 1.7
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 153 VMWKYFVERNFKIKHSVNFIQHEAITKKLNT 61
           V+W+YF E     K +V+ +Q   ITK+LNT
Sbjct: 29  VLWRYFTELGSSAKETVDQLQQAEITKQLNT 59


>UniRef50_Q6FD43 Cluster: Esterase; n=4; Acinetobacter|Rep: Esterase
           - Acinetobacter sp. (strain ADP1)
          Length = 294

 Score = 34.3 bits (75), Expect = 1.7
 Identities = 18/36 (50%), Positives = 23/36 (63%)
 Frame = -1

Query: 168 LPYQYVMWKYFVERNFKIKHSVNFIQHEAITKKLNT 61
           +PYQ VM  YFVE N  IKH +   +++ I KK NT
Sbjct: 205 VPYQEVMPFYFVETN-SIKHYLFLAENDQIVKKSNT 239


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 460,672,363
Number of Sequences: 1657284
Number of extensions: 8019232
Number of successful extensions: 13265
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13263
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)