Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30151
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032653-3|CAA21713.1|  861|Caenorhabditis elegans Hypothetical ...    29   2.0  
AC025726-9|AAK73924.1|  594|Caenorhabditis elegans Hypothetical ...    27   8.0  

>AL032653-3|CAA21713.1|  861|Caenorhabditis elegans Hypothetical
           protein Y54E5B.2 protein.
          Length = 861

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 150 SHIDTVVGIIIMTRDNCRSVSCDILDKTHSV 242
           SH+ TVVGI++  R+   +VS D    T S+
Sbjct: 792 SHLSTVVGIVVTDRNRIHTVSLDCAVVTSSM 822


>AC025726-9|AAK73924.1|  594|Caenorhabditis elegans Hypothetical
           protein Y71G12B.23a protein.
          Length = 594

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = -2

Query: 287 MYRFINLMFNNLNRANRMRFI*NITTHAATVITCHNNYTYYRINM*CG----NILWNV 126
           +Y F  L+F   N+  ++R+  +I   AA  +    +YT +     CG    N+ W +
Sbjct: 430 VYHFCELLFRQQNKHRKLRYYLHICDRAAIYLFIAASYTPWLTLRHCGLPGLNLKWMI 487


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,945,713
Number of Sequences: 27780
Number of extensions: 204241
Number of successful extensions: 342
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)