Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30151
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g11905.1 68414.m01373 expressed protein                             28   3.2  
At4g33820.1 68417.m04800 glycosyl hydrolase family 10 protein si...    27   5.7  
At2g47460.1 68415.m05923 myb family transcription factor (MYB12)...    27   9.9  

>At1g11905.1 68414.m01373 expressed protein
          Length = 228

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 329 FECNFKNKLISLNGCVNKTRXSA*KC 406
           +  N K  L+SL GC+ KTR     C
Sbjct: 180 YRSNLKGSLLSLTGCLRKTRCCETNC 205


>At4g33820.1 68417.m04800 glycosyl hydrolase family 10 protein
          similar to tapetum-specific endoxylanase [Zea mays]
          GI:7920155; contains Pfam profile PF00331: Glycosyl
          hydrolase family 10
          Length = 570

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +3

Query: 57 YLCLIFLLWPHVE 95
          +LC+IFLLW HV+
Sbjct: 9  FLCMIFLLWCHVD 21


>At2g47460.1 68415.m05923 myb family transcription factor (MYB12)
           similar to myb-related DNA-binding protein GI:1020155
           from [Arabidopsis thaliana]
          Length = 371

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 502 GTPLNISKGHERNHTDHFAIRYWRDSISEKILTFLR 395
           G   ++  GH    TD+    YW   +S K+  F+R
Sbjct: 86  GNRWSLIAGHLPGRTDNEIKNYWNSHLSRKLHNFIR 121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,964,071
Number of Sequences: 28952
Number of extensions: 175005
Number of successful extensions: 271
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)