Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30148
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41990.1 68415.m05194 expressed protein                             31   0.35 
At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein si...    31   0.61 
At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein ...    29   2.5  
At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein ...    29   2.5  
At2g36650.1 68415.m04495 expressed protein                             28   4.3  
At5g45360.1 68418.m05569 F-box family protein  similar to SKP1 i...    27   7.5  
At5g05730.1 68418.m00630 anthranilate synthase, alpha subunit, c...    27   9.9  

>At2g41990.1 68415.m05194 expressed protein 
          Length = 297

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +2

Query: 275 APLLMHYSRFLTCISRIFSFTTRVNGSLTNSIFLRMTHSLMLFQKIKF 418
           +PLL+HYS  L     +  FT   NG  TN + +   H + L+  + F
Sbjct: 194 SPLLLHYSNLLLSSGEMNKFTVGRNGE-TNVVTVVQGHQIPLYGGVSF 240


>At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein
           similar to GTPase activating protein [Yarrowia
           lipolytica] GI:2370595; contains Pfam profile PF00566:
           TBC domain
          Length = 720

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 232 SFVLDNKPLGFPLDRPVVDALFKVPNMYFKDIF 330
           SFV  + P GFP   P  D +F  P++   D+F
Sbjct: 213 SFVPPSSPYGFPSPGPFADDIFDFPSLPVTDLF 245


>At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein
           contains Pfam profile: PF01529: DHHC zinc finger domain
          Length = 596

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 470 SFYIFFG-YYGCKIHQFIKI*FFGTTLDCV 384
           +FY+FF  + G KIHQ+I +  +   + CV
Sbjct: 27  AFYVFFAPFVGKKIHQYIAMGIYTPLITCV 56


>At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein
           contains Pfam profile: PF01529: DHHC zinc finger domain
          Length = 596

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 470 SFYIFFG-YYGCKIHQFIKI*FFGTTLDCV 384
           +FY+FF  + G KIHQ+I +  +   + CV
Sbjct: 27  AFYVFFAPFVGKKIHQYIAMGIYTPLITCV 56


>At2g36650.1 68415.m04495 expressed protein
          Length = 373

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
 Frame = -1

Query: 264 EAKRLIVKNKRFERSQVLAFVVEWIDENKELEWESTFSTSR--QHESFRHVTELFRHIKR 91
           E K  IVK    +   + A+V    +E +EL  +S+ STS     E +R + E +  +K+
Sbjct: 206 ETKNNIVKELEGKVKDMEAYVDVLQEEKEELFMKSSNSTSEMVSVEDYRRIVEEYEELKK 265

Query: 90  -YFSFVEHLHNFSHWHGVFFKYD 25
            Y + V+ + N   W     +++
Sbjct: 266 DYANGVKEVINL-RWSNACLRHE 287


>At5g45360.1 68418.m05569 F-box family protein  similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 316

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = -1

Query: 318 EIHVRNLE*CINNGAIQREAKRLIVKNKRFERSQVLAFVVEWIDENKELEWESTFSTSRQ 139
           E   R LE  +++   + E K    K +R E+ +  A   +  D+ +    + T +   +
Sbjct: 9   ECFARFLESEVSSVEDKEETKEPEAKRQRIEKGETKALEKDE-DQKENGNKDKTDAKRIE 67

Query: 138 HESFRHV-TELFRHIKRYFS 82
              F +V TELFRHI ++ S
Sbjct: 68  SGVFTNVPTELFRHILKFLS 87


>At5g05730.1 68418.m00630 anthranilate synthase, alpha subunit,
           component I-1 (ASA1) identical to SP|P32068
          Length = 595

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 231 FERSQVLAFVVEWIDENKELEWESTFSTSRQH 136
           F+  +  A+V+ WI  +  L +E  +S   QH
Sbjct: 236 FDHVEKKAYVIHWIRLDGSLPYEKAYSNGMQH 267


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,138,236
Number of Sequences: 28952
Number of extensions: 241908
Number of successful extensions: 619
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)