Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30143
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase Gmh1|Schizosa...    25   6.7  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    25   8.9  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    25   8.9  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    25   8.9  

>SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase
           Gmh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 241 CWIEMKCGSLRRRFKNPSI 185
           CW+E KC  L  ++K+  I
Sbjct: 311 CWVENKCAELWTKYKDKII 329


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 360 SPSTSNPSLATKGSASKLTHRHS 428
           SPSTS+PS A+  S SK   + +
Sbjct: 63  SPSTSSPSSASSRSQSKYVRKEA 85


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 201 KRRLKLPHFISIQHTLLYLN-LLYSYHFHLGP*LTE 305
           ++  + P+F +++  L + N ++YSYH+ L P + E
Sbjct: 184 EKTTRCPYF-TVRRMLPFCNVIIYSYHYLLDPKIAE 218


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 333 SAVSVSLLRSPSTSNPSLATKGSASKLTHRHSFRSGG 443
           S ++ S L + + S PSLA   S+S L     F SGG
Sbjct: 442 STLNPSSLGASNLSQPSLANHLSSSGLFDNGLFSSGG 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,060,015
Number of Sequences: 5004
Number of extensions: 39729
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)