Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30143
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0293 - 2139421-2139600,2139716-2140471,2140830-2140935,214...    31   0.55 
05_07_0282 + 28934359-28936458                                         31   0.73 
06_03_1126 + 27805982-27806475,27806617-27807202                       29   2.2  
09_04_0107 - 14640097-14640348,14640472-14640701,14640805-146412...    27   6.8  
04_04_1157 - 31333870-31334220,31334440-31334590,31334678-313349...    27   8.9  
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093...    27   8.9  
01_03_0022 + 11724319-11725381,11725476-11725582                       27   8.9  

>06_01_0293 -
           2139421-2139600,2139716-2140471,2140830-2140935,
           2140999-2141249,2141342-2141443,2141557-2141876,
           2142350-2142546,2143668-2143786,2143876-2143997,
           2144877-2145081
          Length = 785

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 478 ARRSKSRASQNLPPDRKLC-LWVNLLAEPFVASDGFDVD 365
           AR       Q  PP   +C +   ++A+P+VASDG+  D
Sbjct: 704 AREMAFNGHQTAPPSHFICPILQEVMADPYVASDGYTYD 742


>05_07_0282 + 28934359-28936458
          Length = 699

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -1

Query: 438 RIGNCVCGLIYSPSPSSQATGSTLTVTGEGSPKQR*CSGDV 316
           + G C  G++    PSS+ T S+++VT  G P++    G V
Sbjct: 617 KAGKCRSGIVTRLKPSSKITASSMSVTCAGPPQKSRSMGTV 657


>06_03_1126 + 27805982-27806475,27806617-27807202
          Length = 359

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +3

Query: 357 RSPSTSNPSLATKGSASKLTHRHSFRSGGRFC 452
           R+ +T++ S A+  +A++  HRH  R GG FC
Sbjct: 210 RTAATNHSSAASSHAAAQ-QHRHHHRGGGGFC 240


>09_04_0107 -
           14640097-14640348,14640472-14640701,14640805-14641215,
           14641481-14643831,14643927-14644093
          Length = 1136

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = +3

Query: 336 AVSVSLLRSPSTSNPSLATKGS-ASKLTHRHSFRS 437
           +V+  L R P+ S+PS A++GS A+ ++ R SF S
Sbjct: 300 SVASQLGRKPAASSPSAASRGSAAAAVSGRTSFAS 334


>04_04_1157 -
           31333870-31334220,31334440-31334590,31334678-31334909,
           31335001-31335211,31335517-31335635,31335720-31335953,
           31336000-31336201,31336297-31336676,31336792-31336856,
           31337362-31337427,31337883-31337957,31338233-31338304,
           31338994-31339062,31339150-31339221,31339325-31339396,
           31339791-31339862,31339947-31340018,31340474-31340545,
           31340645-31340828,31341474-31341588
          Length = 961

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 202 NGALNYHTSFQSSTLCSI*TCYIHIIST*GP 294
           N A+    +FQ+ST+C I    IH +   GP
Sbjct: 80  NPAITCDCTFQNSTICRITKLKIHAVDASGP 110


>01_06_1670 -
           39007402-39008229,39008320-39008567,39009159-39009364,
           39009454-39011054
          Length = 960

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = -1

Query: 492 DELTGQGGARA--VLRRIYHRIGNCVCGLIYSPSPSSQATGSTLTVTGEGSPKQR 334
           DE  G GGA A       Y  +GN   G +   S  + ++G   + +  GSP+ R
Sbjct: 179 DEFGGSGGAAAPPAAAMDYRYVGNAGIGRMDEKSSETTSSGDEASRSTGGSPELR 233


>01_03_0022 + 11724319-11725381,11725476-11725582
          Length = 389

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 360 SPSTSNPSLATKGSASKLTHRHSFRSGGR 446
           +PS+S+P  AT+  +S+ T R  F   G+
Sbjct: 218 TPSSSSPDTATQSESSETTQRQPFMGYGQ 246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,669,329
Number of Sequences: 37544
Number of extensions: 269710
Number of successful extensions: 690
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)