Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30143
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56873| Best HMM Match : K-box (HMM E-Value=0.18)                    29   2.3  
SB_10136| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_59081| Best HMM Match : TSP_1 (HMM E-Value=2.5)                     27   9.2  

>SB_56873| Best HMM Match : K-box (HMM E-Value=0.18)
          Length = 214

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 78  CQICVYGMEHRIKEYHLSVLKSSS 149
           C IC+YG+  RI++   +V KS+S
Sbjct: 147 CDICMYGLRARIQDLERAVSKSNS 170



 Score = 27.1 bits (57), Expect = 9.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 78  CQICVYGMEHRIKEYHLSVLKSSS 149
           C +C+YG+  RI++   +V K +S
Sbjct: 172 CDVCMYGLRARIQDLERAVSKGNS 195


>SB_10136| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 247 KVCWIEMKCGSLRRRFKNPS 188
           KV W+++KCG+   + K+PS
Sbjct: 54  KVHWLQLKCGAFEEKGKSPS 73


>SB_59081| Best HMM Match : TSP_1 (HMM E-Value=2.5)
          Length = 122

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 276 HFHLGP*LTETPWRRHRYISAVSVSLLRSPST 371
           H H  P    TP  RH++ SA++  L  +P+T
Sbjct: 57  HKHPKPTQHTTPCTRHKHTSAITAELKPAPTT 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,582,731
Number of Sequences: 59808
Number of extensions: 309217
Number of successful extensions: 681
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)