Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30141
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g12370.1 68418.m01455 exocyst complex component Sec10-related...    32   0.20 
At4g15830.1 68417.m02408 expressed protein                             32   0.26 
At1g71210.1 68414.m08217 pentatricopeptide (PPR) repeat-containi...    29   1.9  
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel...    28   3.2  
At1g24610.1 68414.m03096 SET domain-containing protein low simil...    27   5.7  
At5g41050.1 68418.m04990 expressed protein                             27   7.5  
At4g24010.1 68417.m03450 cellulose synthase family protein simil...    27   7.5  
At4g23530.1 68417.m03391 expressed protein                             27   7.5  
At5g63790.1 68418.m08006 no apical meristem (NAM) family protein...    27   9.9  
At3g14560.1 68416.m01844 expressed protein                             27   9.9  
At2g37500.1 68415.m04599 arginine biosynthesis protein ArgJ fami...    27   9.9  

>At5g12370.1 68418.m01455 exocyst complex component Sec10-related
           low similarity to SP|O00471 Exocyst complex component
           Sec10 (hSec10) {Homo sapiens}
          Length = 858

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
 Frame = +3

Query: 147 PEVEAALRTFGNCLKGLVD--------LNVLKTEI--EEAKPNGALDEVFKKYCDKSAQL 296
           PEV+  L  F +  K LVD        LN LK E+  +++K    L E      +  A+L
Sbjct: 87  PEVDGLLSLFKDACKELVDLRKQVDGRLNTLKKEVSTQDSKHRKTLTEGVDGLFESFARL 146

Query: 297 KGCISSVLQGVRPCVGNDYANHINDAQNSTNQLIDFVCY 413
            G ISSV Q     +G D+    +  + + +Q ID + Y
Sbjct: 147 DGRISSVGQTAAK-IG-DHLQSADAQRETASQTIDLIKY 183


>At4g15830.1 68417.m02408 expressed protein
          Length = 296

 Score = 31.9 bits (69), Expect = 0.26
 Identities = 18/70 (25%), Positives = 32/70 (45%)
 Frame = +3

Query: 78  DDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPNGALD 257
           ++  +   ++ +Q   +   DK+PE   A R+  N L      N      EE    G+  
Sbjct: 217 NEMEEFGMILLAQMAADQLSDKLPEAREAARSMVNSLFEKFTWN------EEEDEEGSKQ 270

Query: 258 EVFKKYCDKS 287
           E +KK+C+K+
Sbjct: 271 EAWKKFCEKN 280


>At1g71210.1 68414.m08217 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 879

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +3

Query: 48  ITIFAAGVLADDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEI 227
           IT F   VL  +  +   V  +     N EDK+PE+++     G    G +D+ V    +
Sbjct: 740 ITAFIGNVLLHNAMKSKGVYEAWTRMRNIEDKIPEMKSLGELIG-LFSGRIDMEVELKRL 798

Query: 228 EE 233
           +E
Sbjct: 799 DE 800


>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
            contains Pfam PF02138: Beige/BEACH domain; contains Pfam
            PF00400: WD domain, G-beta repeat (3 copies)
          Length = 2946

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 72   LADDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVD 203
            +AD   QI+AV   + T  +A +    V  A  ++G+C   L +
Sbjct: 1443 MADSSGQISAVAMERLTAASAAEPYESVSCAFVSYGSCAMDLAE 1486


>At1g24610.1 68414.m03096 SET domain-containing protein low
           similarity to SP|Q43088 Ribulose-1,5 bisphosphate
           carboxylase/oxygenase large subunit N-
           methyltransferase, chloroplast precursor (EC 2.1.1.127)
           {Pisum sativum}; contains Pfam profile PF00856: SET
           domain
          Length = 476

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = -3

Query: 259 SSSAPFGLASSISVFRT 209
           S+ APFG+A+ I+VFRT
Sbjct: 392 SAVAPFGIANEIAVFRT 408


>At5g41050.1 68418.m04990 expressed protein
          Length = 172

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 21/82 (25%), Positives = 33/82 (40%)
 Frame = +3

Query: 195 LVDLNVLKTEIEEAKPNGALDEVFKKYCDKSAQLKGCISSVLQGVRPCVGNDYANHINDA 374
           L+ LN L  +   AKPNG +  +   YCD  +       S      P V        N A
Sbjct: 14  LLSLNSLSLKHSSAKPNGKITVMGLVYCDVCSNNSFSNHSYF---IPGVEVRIICRFNSA 70

Query: 375 QNSTNQLIDFVCYKDGDRIALF 440
            + T ++I F   +  + + L+
Sbjct: 71  SSRTREMITFSANRTTNELGLY 92


>At4g24010.1 68417.m03450 cellulose synthase family protein similar
           to Zea mays cellulose synthase-5 [gi:9622882], -4
           [gi:9622880]
          Length = 770

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 117 CTKNNAEDKVPEVEAALRTFGNCLKG-LVDLNVLKTEIEE 233
           C KNN +D+ PEV  +  +     +   +  N+LK E+E+
Sbjct: 166 CKKNNVQDRSPEVYFSSESHSRSDEAENLKTNILKCEVEQ 205


>At4g23530.1 68417.m03391 expressed protein
          Length = 396

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -3

Query: 505 FKKHVL-RFSVFCWKHSGPPSAMNKAIRSPS 416
           F+KHV  RFS      S PPS+ + A+  PS
Sbjct: 39  FQKHVAERFSDLITSPSPPPSSSSSAVSQPS 69


>At5g63790.1 68418.m08006 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           contains similarity to NAC-domain protein
          Length = 312

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 244 FGLASSISVFRTFKSTSPLRQFPKVRN 164
           F L SSIS+F       P+R+F K +N
Sbjct: 3   FALFSSISIFEINHKDPPIRRFIKTQN 29


>At3g14560.1 68416.m01844 expressed protein
          Length = 154

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 19/76 (25%), Positives = 31/76 (40%)
 Frame = +3

Query: 147 PEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPNGALDEVFKKYCDKSAQLKGCISSVLQG 326
           P +EA        + GL D      + +    +   D+    +C + + + G + S   G
Sbjct: 62  PTIEARKMNMQQTISGLEDDFGWLNDFDIGMISLQNDDEMMNWCTELSYMDGVVDS---G 118

Query: 327 VRPCVGNDYANHINDA 374
           V    G DY +HIN A
Sbjct: 119 VLEIEGGDYYSHINYA 134


>At2g37500.1 68415.m04599 arginine biosynthesis protein ArgJ family
           contains Pfam profile: PF01960 ArgJ family
          Length = 468

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 276 CDKSAQLKGCISSVLQGVRPCVGND 350
           C ++AQL+ C+ +V+QG+   +  D
Sbjct: 310 CKEAAQLQACLDAVMQGLAKSIAWD 334


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,515,984
Number of Sequences: 28952
Number of extensions: 207122
Number of successful extensions: 559
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)