Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30140
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 34 0.015
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa... 30 0.24
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 28 0.95
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 5.1
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 25 6.7
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 25 6.7
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 25 8.9
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 8.9
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 8.9
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr... 25 8.9
SPAC22E12.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 8.9
>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 33.9 bits (74), Expect = 0.015
Identities = 22/105 (20%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Frame = +3
Query: 168 IAGCLMFALAPTRQWFYSAPLFNIFSFTGLTAIRSIATKSVPTEEVAKLSALMGVTESLA 347
++ ++ A+A + ++A + S + ++SIA V +E ++ A V E++A
Sbjct: 533 LSAAVLLAVAKSDVALFTAVIIQAISNMVVPCVQSIALNGVQSEYNGRVLAAFAVFEAVA 592
Query: 348 PSIYMPASSYIYMSTIE-TFPGAFYLFDAALTVVALCLFGMIYIL 479
I P +++Y +++ ++P + A V+ C F +I+ +
Sbjct: 593 LIIRGPIYAFVYTESMKVSYPNMIFFLSA---VIYGCCFIIIFFM 634
>SPCC1753.03c |rec7||meiotic recombination protein Rec7
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 339
Score = 29.9 bits (64), Expect = 0.24
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -3
Query: 190 ANMRHPAILLTPAKAPIMLSWTFIRLLSTNIQNMVPKRPTTILIVP 53
AN ++P I TP + SW + + N++P PTT I+P
Sbjct: 258 ANSQYPIIAATPLNSQTQASWV-AQPENQAYANLIPSPPTTSQILP 302
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 27.9 bits (59), Expect = 0.95
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +3
Query: 66 IVVGLLGTIFCILV--LSKRMNVQDSI-IGALAGVSRIAGCLMFAL 194
+V+G LG +FC L K + V D++ I A GV + G ++ AL
Sbjct: 311 VVIGALGAVFCYAATYLKKIIRVDDALDIFAEHGVGGMVGNILTAL 356
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 5.1
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 92 ILYISAQQTNECPRQHYRRFSGSEQDSRMPHVRPCSDQTMVLF-RSSIQHLQFYW 253
+ Y S T CP+ H + + +P R C + ++ F R ++H Q +W
Sbjct: 2565 VYYRSTGMTIMCPKNHEKVLVLFCDEINLPRSRNCLAEDVICFLRHMLEH-QGFW 2618
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 25.0 bits (52), Expect = 6.7
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -2
Query: 338 FRDAHKCTQLGNFFCRNALSSY 273
FR H C G FC N +S+
Sbjct: 43 FRRRHHCRWCGKLFCYNCCNSF 64
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.0 bits (52), Expect = 6.7
Identities = 19/92 (20%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Frame = +3
Query: 219 SAPLFNIFSFTG------LTAIRSIATKSVPTEEVAKLSALMGVTESLAPSIYMPASSYI 380
++ LF + FTG + A+R+++ K+ ++V + ++ +IY A+ ++
Sbjct: 537 TSELFALVIFTGEESKIRMNAVRNVSVKAPSMQKVTNRIVIFIFALVVSMAIYCTAAYFV 596
Query: 381 YMSTIETFPGAFYLFDAALTVVALCL-FGMIY 473
+ +E +YL ++ L+ V + + F ++Y
Sbjct: 597 WQKKVER--KLWYLTNSKLSFVPILVSFIILY 626
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 24.6 bits (51), Expect = 8.9
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 98 YISAQQTNECPRQHYRRFSGSEQDSRMPHVRPCSDQ-TMVLF 220
Y+S+ Q +QH + E D+++ P SD+ T +LF
Sbjct: 101 YLSSNQPTNVYKQHQDDLAPPEADNQITRDVPISDEKTNILF 142
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 213 FYSAPLFNIFSFTGLTAIR 269
F SA LFN+F F+G +R
Sbjct: 297 FVSASLFNVFLFSGTVFMR 315
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 24.6 bits (51), Expect = 8.9
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Frame = +3
Query: 291 PTEEVAKLSALMGVTESLAPSIYMPASSY------IYMSTIETFPGAFYLFDAALTVV-- 446
P +SA + + ++ +PASSY + S + G+ + F T +
Sbjct: 284 PLSSELDVSAFSEINSKIK-NVDVPASSYSSPISKVSPSDVTEEDGSLFFFWMDYTEMYG 342
Query: 447 ALCLFGMIYILARKKNIA 500
+LCLFG +Y A K+ ++
Sbjct: 343 SLCLFGKVYDKATKQYVS 360
>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 24.6 bits (51), Expect = 8.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 93 IWFPKDRRRY*LSHKYCIPPP*SQIFLI 10
IWFP + R+ + K + PP + FLI
Sbjct: 201 IWFPVHQIRHLFTFKAIVAPPAAIAFLI 228
>SPAC22E12.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 96
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 109 STNIQNMVPKRPTTILIVP*ILYSTSVKPNFPYCVQ 2
+ NI +PK+P L+ ILY + F Y +Q
Sbjct: 44 TNNINQFIPKQPFFKLLDCCILYKLQTEDRFVYNMQ 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,144,721
Number of Sequences: 5004
Number of extensions: 41920
Number of successful extensions: 115
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -