Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30140
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16675| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.020
SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.11 
SB_10083| Best HMM Match : Ion_trans (HMM E-Value=0)                   32   0.32 
SB_51718| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.74 
SB_10449| Best HMM Match : Ribosomal_L22 (HMM E-Value=7.8)             31   0.74 
SB_29556| Best HMM Match : Ion_trans (HMM E-Value=0)                   30   0.98 
SB_29065| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_29326| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-33)                 28   5.3  
SB_2438| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.9  

>SB_16675| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 35.9 bits (79), Expect = 0.020
 Identities = 28/128 (21%), Positives = 57/128 (44%), Gaps = 1/128 (0%)
 Frame = +3

Query: 75  GLLGTIFCILVLSKRMNVQDSIIGALAGVSRIAGCLMFALAPTRQWFYSAPLFNIFSFTG 254
           G LG    I +L K +N  + +   +  +S ++G L+FA +      +  P  +      
Sbjct: 133 GGLGGAVMISLLKKCLNELNIV--RVGYISVMSGLLLFAFSDRTWMVFLGPAVSFARGVT 190

Query: 255 LTAIRSIATKSVPTEEVAKLSALMGVTESLAPSIYMPASSYIY-MSTIETFPGAFYLFDA 431
                 +++K V  ++   L A++G+  ++   +     + IY MS    FPG  ++  A
Sbjct: 191 DPIFLDMSSKIVSQDDQGSLFAVVGILSTIGELVGTSLFNNIYPMSLRFGFPGLVFVISA 250

Query: 432 ALTVVALC 455
            + ++ LC
Sbjct: 251 GIFLIILC 258


>SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 509

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 34/156 (21%), Positives = 65/156 (41%), Gaps = 13/156 (8%)
 Frame = +3

Query: 42  YSIYGTINIVVGLLGTIFCI--------LVLSKRMNVQDSIIGALAGVSRIAGCLMFALA 197
           Y +  +  +V   LGT+ C+        + L   M + +     +  +  IAG  M   +
Sbjct: 295 YPLCWSAELVGYFLGTLLCVKAFGAVLGIWLGSLMKLTNYTAAQIGTLFLIAGLTMIGFS 354

Query: 198 PTRQWFYSAPLFNIFSFTGLTAIRSIATKSVPTEEVAKLSALMGVTESL----APSIYMP 365
            T    + + + N+FS      IR+  ++ V  EE   L A++   ESL    +  I+ P
Sbjct: 355 QTTFLMFMSCVANLFSGVPQPCIRAQMSQMVGKEEQGALFAILASLESLTNFTSQLIFNP 414

Query: 366 ASSYIYMSTIETF-PGAFYLFDAALTVVALCLFGMI 470
             ++   +    +  G  +  +A + V+   L G+I
Sbjct: 415 LYAWSIANVAWKYAAGIPFFVNAGIAVIPFILLGVI 450


>SB_10083| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1457

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
 Frame = +3

Query: 216 YSAPLFNIFS--FTGLTAIRSIATKSVPTEEVAKLSALMGVTESLAPSIYMPASSYIYMS 389
           Y + L NIF     GL+    +         V +   L+ + + + P  Y        M+
Sbjct: 513 YLSQLQNIFDGFVVGLSVTELLLENGYARLSVFRSIRLLRIFKLVRPVRYQLLVVIRTMT 572

Query: 390 TIETFPGAFYLFDAALTVVALCLFGMIYILARKKNIALSA 509
           ++ TF G  +LF  A  ++ + LFG  +     +NI++ A
Sbjct: 573 SVVTFFGLLFLFMFAFAILGMNLFGGEFYFPNAENISVPA 612


>SB_51718| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1602

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
 Frame = +3

Query: 69   VVGLLGTIFCILVLSKRMNVQDSIIGALAGVSRIAGCLMF-ALAPTRQWFYSAPLFNIFS 245
            +VGL+G +FC L  S R  V +  +     +     CLM  + +P  ++   + L  ++ 
Sbjct: 1336 MVGLVGPLFCDLFHSDRYLVNNMELKIRLDLHEPKFCLMSGSTSPAEKYKVESALLRLYH 1395

Query: 246  FTGLTAIRSIATKSVPTEEVAKLS 317
             T   ++R+   K + +    K+S
Sbjct: 1396 VTPSDSVRAAHAKIMRSPSAPKMS 1419


>SB_10449| Best HMM Match : Ribosomal_L22 (HMM E-Value=7.8)
          Length = 274

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
 Frame = +3

Query: 69  VVGLLGTIFCILVLSKRMNVQDSIIGALAGVSRIAGCLMF-ALAPTRQWFYSAPLFNIFS 245
           +VGL+G +FC L  S R  V +  +     +     CLM  + +P  ++   + L  ++ 
Sbjct: 12  MVGLVGPLFCDLFHSDRYLVNNMELKIRLDLHEPKFCLMSGSTSPAEKYKVESALLRLYH 71

Query: 246 FTGLTAIRSIATKSVPTEEVAKLS 317
            T   ++R+   K + +    K+S
Sbjct: 72  VTPSDSVRAAHAKIMRSPSAPKMS 95


>SB_29556| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 712

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
 Frame = +3

Query: 216 YSAPLFNIFSFTGLTAIRSIATKSVPTEEVAKLSA-----LMGVTESLAPSIYMPASSYI 380
           Y + L NIF   G   + S+ T+ +     A+LS      L+ + + + P  Y       
Sbjct: 256 YLSQLQNIFD--GFVVVLSV-TELLLENGYARLSVFRSIRLLRIFKLVRPVRYQLLVVIR 312

Query: 381 YMSTIETFPGAFYLFDAALTVVALCLFGMIYILARKKNIALSA 509
            M+++ TF G  +LF  A  ++ + LFG  +     +NI++ A
Sbjct: 313 TMTSVVTFFGLLFLFMFAFAILGMNLFGGEFYFPNAENISVPA 355


>SB_29065| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 342 LAPSIYMPASSYIYMSTIETFPGAFYLFDAALTVVALCLFGMIYIL 479
           +AP + +  +  IY  T++ FP  FYL       ++ C+  MIY +
Sbjct: 139 MAPFVIVSFTE-IYSGTMDNFPRQFYLATTNSAGISSCVNPMIYAI 183


>SB_29326| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-33)
          Length = 346

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 458 IRHDLHFSAKEKHCFVS 508
           I  D++F AK KHCFV+
Sbjct: 159 IFRDIYFDAKSKHCFVA 175


>SB_2438| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1086

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 71  RRSFGNHILYISAQQTNECPRQHYRRFSGSEQ 166
           +R +G   LY   +   +CPR +YR FSG E+
Sbjct: 89  QRMYG--FLYALKRTKVQCPRNNYRPFSGIER 118


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,052,746
Number of Sequences: 59808
Number of extensions: 318494
Number of successful extensions: 713
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)