Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30140
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   0.61 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   2.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   2.5  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   4.3  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   4.3  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               21   7.5  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   10.0 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   10.0 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   10.0 

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 24.6 bits (51), Expect = 0.61
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
 Frame = -2

Query: 302 FFCRNALSSY*PD--C-CQTSKTEDVE*RSGIEPLSGRSK---GEHEASCYPAHSR*SAY 141
           F C+     Y P   C C+     DVE +   E   G+ K   G H     PAHS+ S Y
Sbjct: 232 FLCKGDGKWYLPSGGCHCKPGYQADVEKQECTECPIGKFKHEAGSHSCEACPAHSKSSDY 291


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 441 VVALCLFGMIYILARKKNIALSANV 515
           ++++CLFG+  I  +  + ALS NV
Sbjct: 8   LLSICLFGLQEIAIQPGSNALSRNV 32


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 480 LKCRSCRIDIELQQLRLH 427
           L+   CR D E+Q+LR H
Sbjct: 21  LEALLCRRDAEIQELRSH 38


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -3

Query: 169 ILLTPAKAPIMLSWTFIRLLST 104
           +L  P K P ++SW   ++++T
Sbjct: 203 MLPDPKKTPFLISWGIAQVVTT 224


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -3

Query: 169 ILLTPAKAPIMLSWTFIRLLST 104
           +L  P K P ++SW   ++++T
Sbjct: 203 MLPDPKKTPFLISWGIAQVVTT 224


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 425 KQVKCTRKCFYSRH 384
           + +KC  KCF ++H
Sbjct: 53  QNLKCYLKCFMTKH 66


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 382 TCLL*KHFRVHFTC 423
           T L+ KH ++H TC
Sbjct: 316 TPLIQKHLKIHDTC 329


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 5/7 (71%), Positives = 7/7 (100%)
 Frame = +2

Query: 20  IWLYGGG 40
           +W+YGGG
Sbjct: 162 VWIYGGG 168


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 5/7 (71%), Positives = 7/7 (100%)
 Frame = +2

Query: 20  IWLYGGG 40
           +W+YGGG
Sbjct: 162 VWIYGGG 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,648
Number of Sequences: 438
Number of extensions: 2686
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)