Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30140
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19450.1 68414.m02423 integral membrane protein, putative / s...    30   0.80 
At1g75220.1 68414.m08738 integral membrane protein, putative str...    29   1.4  
At5g48740.1 68418.m06032 leucine-rich repeat family protein / pr...    29   2.5  
At2g38650.1 68415.m04747 glycosyl transferase family 8 protein c...    28   3.2  
At3g27020.1 68416.m03380 oligopeptide transporter OPT family pro...    27   5.7  
At5g41060.1 68418.m04991 zinc finger (DHHC type) family protein ...    27   7.5  
At5g14770.1 68418.m01733 pentatricopeptide (PPR) repeat-containi...    27   7.5  
At4g19003.2 68417.m02800 expressed protein contains Pfam PF05871...    27   7.5  
At4g19003.1 68417.m02799 expressed protein contains Pfam PF05871...    27   7.5  
At4g12940.1 68417.m02023 expressed protein hypothetical protein ...    27   7.5  
At1g41830.1 68414.m04829 multi-copper oxidase type I family prot...    27   9.9  
At1g33440.1 68414.m04139 proton-dependent oligopeptide transport...    27   9.9  
At1g03380.1 68414.m00317 expressed protein                             27   9.9  

>At1g19450.1 68414.m02423 integral membrane protein, putative /
           sugar transporter family protein similar to GB:U43629
           GI:1209756 integral membrane protein from [Beta
           vulgaris]; contains Pfam profile PF00083: major
           facilitator superfamily protein; contains TIGRfam
           TIGR00879: Sugar transporter
          Length = 488

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 31/143 (21%), Positives = 64/143 (44%), Gaps = 10/143 (6%)
 Frame = +3

Query: 24  GFTEVEYSIYGTINIVVGLLGTIFCILVLSKRMNVQDSIIGALAGVSRIAGCLMFALAPT 203
           G T  EYS++G+++ V  ++G I     +++ +  + S++  +A +  I G L  + A  
Sbjct: 82  GLTVSEYSVFGSLSNVGAMVGAI-ASGQIAEYVGRKGSLM--IAAIPNIIGWLSISFAKD 138

Query: 204 RQWFYSAPLF-----NIFSFTGLTAIRSIATKSV--PTEEVAKLSALMGVTESLAPSIYM 362
             + Y   L       I S+T    I  IA +++      V +LS  +G+  +    +++
Sbjct: 139 TSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQTMRGALGSVNQLSVTIGIMLAYLLGLFV 198

Query: 363 PASSYIYMSTIE---TFPGAFYL 422
           P      +  +      PG F++
Sbjct: 199 PWRILAVLGVLPCTLLIPGLFFI 221


>At1g75220.1 68414.m08738 integral membrane protein, putative strong
           similarity to integral membrane protein GI:1209756 from
           [Beta vulgaris]; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 487

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
 Frame = +3

Query: 24  GFTEVEYSIYGTINIVVGLLGTIFCILVLSKRMNVQDSIIGALAGVSRIAGCLMFALAPT 203
           G T  EYS++G+++ V  ++G I     +++ +  + S++  +A +  I G L  + A  
Sbjct: 81  GLTVSEYSVFGSLSNVGAMVGAI-ASGQIAEYIGRKGSLM--IAAIPNIIGWLCISFAKD 137

Query: 204 RQWFYSAPLF-----NIFSFTGLTAIRSIATKSV--PTEEVAKLSALMGVTESLAPSIYM 362
             + Y   L       I S+T    I  IA +++      V +LS  +G+  +    +++
Sbjct: 138 TSFLYMGRLLEGFGVGIISYTVPVYIAEIAPQNMRGGLGSVNQLSVTIGIMLAYLLGLFV 197

Query: 363 P 365
           P
Sbjct: 198 P 198


>At5g48740.1 68418.m06032 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 895

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +3

Query: 222 APLFNIFSFTGLTAIRSIATKSVPTEEVAKLSALMGVTESLA--PSIYMPASSYIYM 386
           +P    +SF GLT + S      P   V K + ++   ESL+   S++ P   YI +
Sbjct: 216 SPFHASWSFNGLTKLNSFNITENPPASVLKTARILARKESLSYTLSLHTPGDYYIIL 272


>At2g38650.1 68415.m04747 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 619

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 309 KLSALMGVTESLAPSIYMPASSYIYMSTIETFPGAFYLFDAALTV 443
           KL  ++ +TE  A S +M  S ++Y   ++T P + +     LTV
Sbjct: 261 KLRQILDLTEDEA-SFHMKQSVFLYQLAVQTMPKSLHCLSMRLTV 304


>At3g27020.1 68416.m03380 oligopeptide transporter OPT family
           protein similar to iron-phytosiderophore transporter
           protein yellow stripe 1 [Zea mays] GI:10770865; contains
           Pfam profile PF03169: OPT oligopeptide transporter
           protein
          Length = 676

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = +3

Query: 69  VVGLLGTIFCILVLSKRMNVQDSIIGALAGVSRIAGCLMFALAPTRQWFYSAPLFNIFSF 248
           V  LLGT+FCI  ++ ++N+    +G +  ++  AG L F    +   F S   F +  F
Sbjct: 45  VSALLGTLFCI--ITHKLNL---TVGIIPSLNVAAGLLGFFFVKSWTGFLSKLGFTVKPF 99

Query: 249 T 251
           T
Sbjct: 100 T 100


>At5g41060.1 68418.m04991 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 410

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = +3

Query: 3   CTQ*GKFGFTEVEYSIYGTINIVVGLLGTIFCILVLSKRMN 125
           C Q G+F F     S+  TI+++V  + TIFCI V SK M+
Sbjct: 31  CLQ-GRFIFGPDVRSLGLTISLIVAPV-TIFCIFVASKLMD 69


>At5g14770.1 68418.m01733 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 938

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
 Frame = +3

Query: 240 FSFTGLTAIRSIATKSVPTEEVAKLSALMGVTESLAPSIYMPASSYIYMSTIETFPGAFY 419
           F  +   +  SI    +P  E   LS    +T+        P  + +Y+S   T    + 
Sbjct: 14  FFLSNCRSFSSIKRPQIPESEETSLS----ITQRRFDPDLAPIKTRVYVSLFHTLFRLYL 69

Query: 420 ----LFDAALTVVALCLFGMI 470
               L+ AA T+ A+C FG++
Sbjct: 70  SCERLYGAARTLSAMCTFGVV 90


>At4g19003.2 68417.m02800 expressed protein contains Pfam PF05871:
           Eukaryotic protein of unknown function (DUF852)
          Length = 179

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 352 DGANDSVTPISALSLATSSVGTLLVAID-LIAVRPVKLKMLNRG 224
           +G  DSV  +  +   T S+GT L  ID  I +R +KL + N+G
Sbjct: 118 NGLEDSVMTVEEIRSGTESLGTELQGIDRTILMRALKL-LENKG 160


>At4g19003.1 68417.m02799 expressed protein contains Pfam PF05871:
           Eukaryotic protein of unknown function (DUF852)
          Length = 179

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 352 DGANDSVTPISALSLATSSVGTLLVAID-LIAVRPVKLKMLNRG 224
           +G  DSV  +  +   T S+GT L  ID  I +R +KL + N+G
Sbjct: 118 NGLEDSVMTVEEIRSGTESLGTELQGIDRTILMRALKL-LENKG 160


>At4g12940.1 68417.m02023 expressed protein hypothetical protein  -
           Arabidopsis thaliana,PIR2:T08948; expression supported
           by MPSS
          Length = 151

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +2

Query: 2   LYTIRKIWLYGGGIQYL--WDN*YRRRSFGNHILYISAQQTNECPR 133
           +Y  R  ++ G    Y+  W+N    R  GN I  +   Q N+CP+
Sbjct: 81  VYVNRSFFVQGKAQAYIRQWNNWKPYRDLGNKIGVLWPTQDNDCPK 126


>At1g41830.1 68414.m04829 multi-copper oxidase type I family protein
           similar to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Pfam profile:
           PF00394 Multicopper oxidase
          Length = 542

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 363 PASSYIYMSTIETFPGAFYLFDAALTVVALCLFGMIYILAR 485
           P S+Y Y+  ++   G+FY F +     A   FG I IL+R
Sbjct: 108 PRSNYTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSR 148


>At1g33440.1 68414.m04139 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 601

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
 Frame = +3

Query: 27  FTEVEYSIYGTINIVVGLLGTIFCILVLSKRMNVQDSIIGA-----LAGVSRIAGCLMFA 191
           F E+ + +  + N+V   +GT+F + +L   ++  DS +G+     + GV  I+G ++ +
Sbjct: 71  FNEMHFPLSKSANLVTNFIGTVFLLSLLGGFLS--DSYLGSFRTMLVFGVIEISGFILLS 128

Query: 192 L 194
           +
Sbjct: 129 V 129


>At1g03380.1 68414.m00317 expressed protein
          Length = 926

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 157 PAKAPIM-LSWTFIRLLSTNIQNMVPKRPTTILIVP*ILYST 35
           P + P   L W F + LS+N Q++ P     + +V  I YS+
Sbjct: 453 PTRLPASSLPWWFTQSLSSNQQSLSPPTAVALSVVSRIKYSS 494


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,073,220
Number of Sequences: 28952
Number of extensions: 213348
Number of successful extensions: 547
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)