Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30136
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    30   0.24 
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.7  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    25   8.9  
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    25   8.9  
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    25   8.9  

>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 414 CLRCWGKSGNWNSWR 370
           C+ CWG++G W  W+
Sbjct: 340 CVVCWGRTGGWRLWK 354


>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 122

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +2

Query: 350 KRTIRNVRQLFQFPDLPQQRRQNCLLNWKMLA*MLIITISTHTYRS 487
           +RTI      F    + ++     L+ WK+ +   ++T+ST T+ S
Sbjct: 31  QRTILKRPNFFSPNPVVEKMVHPTLITWKLFSFTSVLTVSTFTFAS 76


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 445 LNAYYYYFHSHLPFWWNSGKYGAF 516
           LN Y  YF +H P      K+G+F
Sbjct: 119 LNKYASYFQAHEPTLQKLAKFGSF 142


>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 392 DLPQQRRQNCLLNWK 436
           DLP   + NC  NWK
Sbjct: 229 DLPSSSQNNCKANWK 243


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 14/67 (20%), Positives = 30/67 (44%)
 Frame = +3

Query: 198 SDTASFVLPAPYEAYPQYFVNMEVKNKMDYVKMMDGCLDEKICYNYGIIKENEQFVMYAN 377
           S TA F++   Y  + +YFV   ++N+M       G +  K  +    ++   Q++ +  
Sbjct: 376 SYTALFLISYIYGPFAEYFVPHYIQNRMSQSFFSVGYI-AKSTFKLNPLRLRNQYIYFLT 434

Query: 378 YSNSLTY 398
            +  + Y
Sbjct: 435 NAQVINY 441


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,178,531
Number of Sequences: 5004
Number of extensions: 42127
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)