Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30136
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49134| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.015
SB_17729| Best HMM Match : TPR_2 (HMM E-Value=0.41)                    30   1.3  
SB_6643| Best HMM Match : Antimicrobial_8 (HMM E-Value=0.27)           28   4.0  
SB_32575| Best HMM Match : SNF7 (HMM E-Value=1.1)                      28   5.3  
SB_55426| Best HMM Match : SH3_1 (HMM E-Value=1.90002e-41)             27   6.9  
SB_40492| Best HMM Match : PROCN (HMM E-Value=0)                       27   6.9  
SB_5212| Best HMM Match : SH3_1 (HMM E-Value=4.9e-20)                  27   6.9  
SB_58075| Best HMM Match : SRCR (HMM E-Value=5e-33)                    27   9.2  
SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_49134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1060

 Score = 36.3 bits (80), Expect = 0.015
 Identities = 20/63 (31%), Positives = 33/63 (52%)
 Frame = +2

Query: 32  FSIFYEKMREEAIALFKLFYYAKDFECFYKTACYARVYMNQGNVLIRLLHSYYPALRHRQ 211
           F++ YE  RE A++ FK+     + +  Y+     +    Q N  IR+   Y PA +HR+
Sbjct: 725 FALHYEGSRESAVSAFKMGKSRAEIQRAYRERKKGKDSNWQQNESIRVQKYYTPASKHRR 784

Query: 212 LRS 220
           L+S
Sbjct: 785 LKS 787


>SB_17729| Best HMM Match : TPR_2 (HMM E-Value=0.41)
          Length = 1234

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +3

Query: 273  NKMDYVKMMDGCLD-EKICYNYGIIKENEQFVMYANYSNSLTYPNNEDRIAYLTG 434
            NKM  +K +    D EKI +  G+ ++ E +VM ANY  SL +  + + +  + G
Sbjct: 1057 NKMKAMKALLKSGDTEKIVFFAGVSRQREIYVMAANYLQSLDWRKDPEVMKNIIG 1111


>SB_6643| Best HMM Match : Antimicrobial_8 (HMM E-Value=0.27)
          Length = 251

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 49  KNEGRSHRAVQAVLLCQRF*MFLQNSMLRQSL 144
           K+ GR+HRA   VL+ Q   M ++  ++ QSL
Sbjct: 211 KHHGRAHRAGDEVLVLQMMVMSIKMKLINQSL 242


>SB_32575| Best HMM Match : SNF7 (HMM E-Value=1.1)
          Length = 579

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 258 NMEVKNKMDYVKMMDGCLDEKI 323
           N+E KN +D VK + GCLD  +
Sbjct: 328 NVEFKNALDGVKSVIGCLDRTV 349


>SB_55426| Best HMM Match : SH3_1 (HMM E-Value=1.90002e-41)
          Length = 689

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +3

Query: 267 VKNKMDYVKMMDGCLDEKICYNYGIIKENEQFVMY--ANYSNSLTYPNNED 413
           +++ ++Y  ++   L +++CY+   I+E    V+Y   NY N+L   N +D
Sbjct: 473 IRSIVEYGCVVFSNLPKRLCYSLENIQERALSVIYPNLNYENALVQANLQD 523


>SB_40492| Best HMM Match : PROCN (HMM E-Value=0)
          Length = 1784

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 399  PNNEDRIAYLTGRCWPK 449
            PNNE+ + Y   +CWP+
Sbjct: 1087 PNNENIVGYNNKKCWPR 1103


>SB_5212| Best HMM Match : SH3_1 (HMM E-Value=4.9e-20)
          Length = 300

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +3

Query: 267 VKNKMDYVKMMDGCLDEKICYNYGIIKENEQFVMY--ANYSNSLTYPNNED 413
           +++ ++Y  ++   L +++CY+   I+E    V+Y   NY N+L   N +D
Sbjct: 107 IRSIVEYGCVVFSNLPKRLCYSLENIQERALSVIYPNLNYENALVQANLQD 157


>SB_58075| Best HMM Match : SRCR (HMM E-Value=5e-33)
          Length = 204

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 219 ERSWRCRSAG**LCSRRIR 163
           +R W CRSAG  +C RRI+
Sbjct: 27  QREWSCRSAG-VICKRRIK 44


>SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2250

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +2

Query: 110  CFYKTACYARVYMNQGNVLIRLLHSYYPALRHRQLRSTCSIRSLSS 247
            C+Y   C++  Y+        L HS+YP   H  +R +     LS+
Sbjct: 1928 CYYLGPCWSGHYLYLYRSRDHLTHSHYPEYGHEVIRHSGKPSPLST 1973


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,681,388
Number of Sequences: 59808
Number of extensions: 291979
Number of successful extensions: 597
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)