Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30136
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024844-6|AAK29956.1|  442|Caenorhabditis elegans Hypothetical ...    28   3.4  
U97008-3|AAB52308.1|  380|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.        28   4.6  
U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein ...    28   4.6  
L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (spli...    27   6.0  

>AC024844-6|AAK29956.1|  442|Caenorhabditis elegans Hypothetical
           protein Y65B4A.1 protein.
          Length = 442

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
 Frame = +3

Query: 324 CYNYGIIKENEQFVMYANYSN---SLTYPNNED---RIAYLTGR 437
           C  YGI+K   + V+YAN+ +   S+T+P  E+    + YL GR
Sbjct: 342 CQKYGIVK---KVVVYANHPDGVVSVTFPTTEESDMAVKYLHGR 382


>U97008-3|AAB52308.1|  380|Caenorhabditis elegans Hypothetical
           protein C03G6.8 protein.
          Length = 380

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +2

Query: 74  LFKLFYYAKDFECFYKTACYARVYMNQGNVLI-RLLH-SYYPALR 202
           L  +  Y K FECF+K +   R+ + +  +L+ ++LH S+Y   R
Sbjct: 200 LLTITEYIKTFECFHKISSNDRLVLTRHIILMCKILHESHYAVSR 244


>U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.
          Length = 803

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 20  KNLEFSIFYEKMREEAIALFKLFYYAKDFECFYKTACYARVYMNQ 154
           KN+      ++M +EAI LF+       FE +YK     R+++ +
Sbjct: 455 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 499


>U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein 4
           protein.
          Length = 840

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 20  KNLEFSIFYEKMREEAIALFKLFYYAKDFECFYKTACYARVYMNQ 154
           KN+      ++M +EAI LF+       FE +YK     R+++ +
Sbjct: 492 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 536


>L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (splicing
            factor) relatedprotein 8 protein.
          Length = 2329

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 399  PNNEDRIAYLTGRCWPK 449
            PNNE+ + Y   +CWP+
Sbjct: 1112 PNNENIVGYNNKKCWPR 1128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,799,053
Number of Sequences: 27780
Number of extensions: 229054
Number of successful extensions: 673
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)