Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30136
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g17620.1 68417.m02636 glycine-rich protein 29 1.4
At2g01630.1 68415.m00089 glycosyl hydrolase family 17 protein / ... 29 1.9
At4g30640.1 68417.m04345 F-box family protein (FBL19) contains s... 29 2.5
At1g65130.1 68414.m07384 ubiquitin carboxyl-terminal hydrolase-r... 29 2.5
At5g24040.1 68418.m02824 F-box family protein similar to unknown... 28 3.2
At4g38780.1 68417.m05491 splicing factor, putative strong simila... 28 3.2
At1g80070.1 68414.m09373 splicing factor, putative strong simila... 28 3.2
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel... 27 9.9
At1g71420.1 68414.m08249 pentatricopeptide (PPR) repeat-containi... 27 9.9
>At4g17620.1 68417.m02636 glycine-rich protein
Length = 544
Score = 29.5 bits (63), Expect = 1.4
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +3
Query: 312 DEKICYNYGIIKENEQFVM 368
DE +C+ YG +KENE +++
Sbjct: 487 DEVLCWLYGTVKENEDYIL 505
>At2g01630.1 68415.m00089 glycosyl hydrolase family 17 protein /
beta-1,3-glucanase, putative similar to
beta-1,3-glucanase GI:15150341 from [Camellia sinensis]
Length = 501
Score = 29.1 bits (62), Expect = 1.9
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +2
Query: 8 GFLPKNLEFSIFYE-KMREEAIALFKLFYYAKDFECFYKTACYARVYMNQGNVLIRLLHS 184
G +P L++++F + +EA+ L +Y F+ A +A Y+N N+ I + S
Sbjct: 207 GVIP--LDYALFQPLQANKEAVDANTLLHYTNVFDAIVDAAYFAMSYLNFTNIPIVVTES 264
Query: 185 YYPA 196
+P+
Sbjct: 265 GWPS 268
>At4g30640.1 68417.m04345 F-box family protein (FBL19) contains
similarity to SKP1 interacting partner 1 GI:10716947
from [Arabidopsis thaliana]
Length = 301
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 131 YARVYMNQGNVLIRLLHSYYPALRHRQLR-STCSIRSLSSI 250
Y + GN+ R++ Y L+H ++R ST + R L S+
Sbjct: 202 YLATFPRYGNIEARIIGKYMTQLKHLEIRYSTLTARGLDSV 242
>At1g65130.1 68414.m07384 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1086
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1
Query: 244 LNILSTWKLKIKWTTLR*WMVALTRKYVIITELSKKTNNS*C 369
L ++S W+LKI ++R WM+ K++ E+S+ T + C
Sbjct: 331 LLLVSFWELKILSCSIRDWMMQFPVKHLAQFEVSEHTLTTEC 372
>At5g24040.1 68418.m02824 F-box family protein similar to unknown
protein (gb|AAD22308.1) ; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 373
Score = 28.3 bits (60), Expect = 3.2
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -3
Query: 124 CFVETFKIFGIIEQLEQRDGFFPHFFVKDREFQILGKES 8
C+ E F++F I + E+R GF K+ E+ ILGK S
Sbjct: 137 CYSEWFELFECISKCEERIGFMGLNREKN-EYMILGKLS 174
>At4g38780.1 68417.m05491 splicing factor, putative strong similarity
to splicing factor Prp8 [Homo sapiens] GI:3661610;
contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
Length = 2332
Score = 28.3 bits (60), Expect = 3.2
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 399 PNNEDRIAYLTGRCWPK 449
PNNE+ + Y +CWP+
Sbjct: 1118 PNNENMVGYNNKKCWPR 1134
>At1g80070.1 68414.m09373 splicing factor, putative strong similarity
to splicing factor Prp8 [Homo sapiens] GI:3661610;
contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
Length = 2382
Score = 28.3 bits (60), Expect = 3.2
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 399 PNNEDRIAYLTGRCWPK 449
PNNE+ + Y +CWP+
Sbjct: 1166 PNNENMVGYNNKKCWPR 1182
>At4g02660.1 68417.m00361 WD-40 repeat family protein /
beige-related contains Pfam PF00400: WD domain, G-beta
repeat; similar to BEIGE (GI:3928547) [Rattus
norvegicus]; lysosomal trafficking regulator - Bos
taurus, EMBL: AF114785
Length = 3471
Score = 26.6 bits (56), Expect = 9.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3
Query: 145 VDSGVACCFVETFKIF 98
+DSG+ CC + TF F
Sbjct: 187 LDSGILCCLIHTFNAF 202
>At1g71420.1 68414.m08249 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 745
Score = 26.6 bits (56), Expect = 9.9
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +3
Query: 234 EAYPQYF-VNMEVKNKMDYVKMMDGCLDEKICYNYGIIKENEQFVMYANYSNSL 392
+AY F E +N +D + + L CY+ +I N MYA N L
Sbjct: 60 QAYAALFQACAEQRNLLDGINLHHHMLSHPYCYSQNVILANFLINMYAKCGNIL 113
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,068,906
Number of Sequences: 28952
Number of extensions: 207431
Number of successful extensions: 548
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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