Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30134
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    31   0.10 
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    31   0.10 
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    27   2.2  
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe...    26   3.8  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    26   3.8  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   5.1  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   6.7  
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac...    25   8.9  

>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
 Frame = +3

Query: 126 ELEIALDHANKANAEAQKNIKRYQAQIKDLQTALXXXXXXXXXXXXXLGI-SERRANALQ 302
           E ++ L      NAE++K+  R + +++DL ++L               + SE+R N L+
Sbjct: 87  EEKLQLTETKCRNAESEKS--RVENELEDLTSSLFEEANRMVANARKETVASEKRVNQLK 144

Query: 303 NELEESRTLLEQADRARRQAE---QELSDAHE 389
            +L ++ TLL        + +     +SD+HE
Sbjct: 145 KQLVDAETLLSSTQHQLTELKDVMHSMSDSHE 176


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
 Frame = +3

Query: 102  KKLEADINELEIALDHANKANAEAQKN-IKRYQAQIKDLQTALXXXXXXXXXXXXXLGIS 278
            KKLE D+N L   L+  N A+ E+ KN I+  +   K L   L             L   
Sbjct: 753  KKLENDLNLLTEKLNKKN-ADTESFKNTIREAELSKKALNDNLGNKENIISDLKNKLSEE 811

Query: 279  ERRANALQNELEESRTLLEQADRARRQAEQELS 377
              R   LQ++L + +  +E  +     A  ELS
Sbjct: 812  STRLQELQSQLNQDKNQIETLNERISAAADELS 844


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 105 KLEADINELEIALDHANKANAEAQKNIKR 191
           KL  + + L   LDH+N  +AE  + IKR
Sbjct: 430 KLGPEYSSLSAILDHSNNIHAEILETIKR 458


>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 182

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 193 TRHKSRICRPLSRRSSAPVTMPANSSASRSVA 288
           T H  RIC+ +SR+++AP   P  SS + + A
Sbjct: 146 TPHVIRICKSVSRQNAAPA--PTASSFAHTTA 175


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 144 DHANKANAEAQKNIKRYQAQIKDLQTAL 227
           D+ N +  +A KN+K YQ +  DLQ +L
Sbjct: 661 DYRN-SRLDAIKNVKTYQIKFSDLQESL 687


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 18/101 (17%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
 Frame = +3

Query: 93  RMKKKLEADINELEIALDHANKANAE-------AQKNIKRYQAQIKDLQTALXXXXXXXX 251
           +M K++ + + E   +L HA    AE         K IK ++   +DL+  L        
Sbjct: 420 KMVKQVSSQLEEARSSLAHATGKLAEINSERDFQNKKIKDFEKIEQDLRACLNSSSNELK 479

Query: 252 XXXXXLGISERRANALQNELEESRTLLEQADRARRQAEQEL 374
                +   ++  N L+ +++E + + E    + +  ++++
Sbjct: 480 EKSALIDKKDQELNNLREQIKEQKKVSESTQSSLQSLQRDI 520


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 18/74 (24%), Positives = 31/74 (41%)
 Frame = +3

Query: 168  EAQKNIKRYQAQIKDLQTALXXXXXXXXXXXXXLGISERRANALQNELEESRTLLEQADR 347
            +  + ++R  A I +LQ  L             L I++ R   L N+L+E + L  + D 
Sbjct: 833  QTDEYLRRKDALINNLQNQLESTKEVANE----LTITKERVLQLTNDLQEEQALAHEKDI 888

Query: 348  ARRQAEQELSDAHE 389
               +A   +   HE
Sbjct: 889  LVERANSRVEVVHE 902


>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 282 RRANALQNELEESRTLLEQADRARRQAEQE 371
           RR + +    E  R L E+ + ARRQ EQ+
Sbjct: 163 RRIDLVLARKEAKRKLKEKEEEARRQKEQQ 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.121    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,294,582
Number of Sequences: 5004
Number of extensions: 16235
Number of successful extensions: 81
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)