Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30134
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.46 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.5  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   10.0 

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.0 bits (52), Expect = 0.46
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 422 PLCRQEETRVRAANPALRPRRTSQRGQELP 511
           P CR++   + AANP L  +  +   Q  P
Sbjct: 99  PSCRRQRYNIAAANPLLAEKLAAPSSQASP 128


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +2

Query: 281  ASRQCSSERTGRVPHTLGAGRPRPSPGRAGTQ 376
            A+ Q    +    P +  A +P+P+ G  GT+
Sbjct: 1003 ANAQQGQAQAQAKPQSQEANKPKPATGGKGTR 1034


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -1

Query: 324 CGTLPVRSEEHW 289
           CG  P RS E W
Sbjct: 371 CGNFPPRSMEPW 382


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.121    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,125
Number of Sequences: 438
Number of extensions: 1349
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)