Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30134
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05270.1 68416.m00575 expressed protein similar to endosome-a...    39   0.002
At5g07660.1 68418.m00877 structural maintenance of chromosomes (...    31   0.46 
At5g25070.1 68418.m02971 expressed protein                             30   0.80 
At4g08580.1 68417.m01410 microfibrillar-associated protein-relat...    27   7.5  
At2g32010.1 68415.m03911 endonuclease/exonuclease/phosphatase fa...    27   7.5  
At3g61710.2 68416.m06916 autophagy protein Apg6 family contains ...    27   9.9  
At3g61710.1 68416.m06915 autophagy protein Apg6 family contains ...    27   9.9  
At3g08670.1 68416.m01007 expressed protein                             27   9.9  
At1g80610.1 68414.m09459 expressed protein                             27   9.9  

>At3g05270.1 68416.m00575 expressed protein similar to
           endosome-associated protein (EEA1) (GI:1016368) [Homo
           sapiens]; similar to smooth muscle myosin heavy chain
           (GI:4417214) [Homo sapiens; contains Pfam profile
           PF05911: Plant protein of unknown function (DUF869)
          Length = 615

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
 Frame = +3

Query: 102 KKLEADINELEIALDHANKANAEAQKNIKRYQAQIKDLQT---ALXXXXXXXXXXXXXLG 272
           KKLEA+  ELE+ L  + K   + Q+ + + Q  + +L+T                  L 
Sbjct: 401 KKLEAENQELELLLGESGKQMEDLQRQLNKAQVNLSELETRRAEKLELTMCLNGTKKQLE 460

Query: 273 ISERRANALQNELEESRTLLEQADRARRQAEQELSDAH 386
            S+ R    + +L E +TLL     A+  AE  L  A+
Sbjct: 461 TSQNRLKETERKLTELQTLLHLTKDAKEAAEDGLKAAN 498


>At5g07660.1 68418.m00877 structural maintenance of chromosomes
           (SMC) family protein similar to SMC-like protein (MIM)
           [Arabidopsis thaliana] GI:5880614; contains Pfam profile
           PF02463: RecF/RecN/SMC N terminal domain
          Length = 1058

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 19/96 (19%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
 Frame = +3

Query: 99  KKKLEADINELEIALDHANKANAEAQKNIKRYQAQIKDLQTALXXXXXXXXXXXXXLGIS 278
           K++ E ++  LE  +    K   + +K++ R + +++DL+ ++               ++
Sbjct: 662 KREAEMNLEGLESTMRRLKKQRTQLEKDLTRKELEMQDLKNSVASETKASPTS----SVN 717

Query: 279 ERRANAL--QNELEESRTLLEQADRARRQAEQELSD 380
           E     +  Q E+EE  +LLE+   + ++AE + ++
Sbjct: 718 ELHLEIMKFQKEIEEKESLLEKLQDSLKEAELKANE 753


>At5g25070.1 68418.m02971 expressed protein
          Length = 736

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
 Frame = +3

Query: 108 LEADINELEIALDHAN--KANAEAQKNIKRYQA---QIKDLQTALXXXXXXXXXXXXXLG 272
           LE D  ++E    +A   KA  E ++ IKR Q     I   +  L               
Sbjct: 599 LEKDKTQMETGKANAELEKAEHEIEETIKRLQEIEKLILSKEKELAISRFQRLRIDSGTA 658

Query: 273 ISERRANALQNELEESRTLLEQADRARRQAEQ 368
            +ER A    ++LEE+  LLE+A  A  +AE+
Sbjct: 659 KAERSAALELSDLEEANLLLEEAQEAESEAEK 690


>At4g08580.1 68417.m01410 microfibrillar-associated protein-related
           similar to Microfibrillar-associated protein 1
           (Associated microfibril protein) (AMF)
           (Swiss-Prot:P55080) [Gallus gallus]
          Length = 435

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
 Frame = +3

Query: 99  KKKLEA-DINELEIALDHANKANAEAQKNIKRYQAQIKDLQT--ALXXXXXXXXXXXXXL 269
           K+KLE   I   +I ++   K + E +KNI   +A I D++T   L             +
Sbjct: 212 KRKLEQRKIETKQIVVEEVRK-DEEIRKNILLEEANIGDVETDDELNEAEEYEVWKTREI 270

Query: 270 GISERRANALQNELEESRTLLEQADRARRQAEQELSD 380
           G  +R  +A +  L E     E+ ++ R   EQE  D
Sbjct: 271 GRIKRERDAREAMLRER----EEIEKLRNMTEQERRD 303


>At2g32010.1 68415.m03911 endonuclease/exonuclease/phosphatase
           family protein similar to inositol polyphosphate
           5-phosphatase I (GI:10444261) and II (GI:10444263)
           [Arabidopsis thaliana]; contains Pfam profile PF03372:
           Endonuclease/Exonuclease/phosphatase family
          Length = 594

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -1

Query: 117 LPQASSSCATPQPCP*P 67
           LP ASS+C TP P P P
Sbjct: 162 LPGASSACHTPSPIPVP 178


>At3g61710.2 68416.m06916 autophagy protein Apg6 family contains
           weak similarity to Beclin 1 (Coiled-coil myosin-like
           BCL2-interacting protein) (Protein GT197)
           (Swiss-Prot:Q14457) [Homo sapiens]; contains Pfam
           profile PF04111: Autophagy protein Apg6
          Length = 386

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 99  KKKLEADINELEIALDHANKANAEAQKNIKRYQ 197
           KKK+E +  +L  A++   K NAE    +K  +
Sbjct: 221 KKKIEEEERKLVAAIEETEKQNAEVNHQLKELE 253


>At3g61710.1 68416.m06915 autophagy protein Apg6 family contains
           weak similarity to Beclin 1 (Coiled-coil myosin-like
           BCL2-interacting protein) (Protein GT197)
           (Swiss-Prot:Q14457) [Homo sapiens]; contains Pfam
           profile PF04111: Autophagy protein Apg6
          Length = 517

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 99  KKKLEADINELEIALDHANKANAEAQKNIKRYQ 197
           KKK+E +  +L  A++   K NAE    +K  +
Sbjct: 221 KKKIEEEERKLVAAIEETEKQNAEVNHQLKELE 253


>At3g08670.1 68416.m01007 expressed protein 
          Length = 567

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 220 PLSRRSSA--PVTMPANSSASRSVAPMLFRTNWKSPAHSWSRPT 345
           P SR SS+  P T    SSASRS  P   R    S +   +RP+
Sbjct: 196 PSSRSSSSARPSTPTRTSSASRSSTPSRIRPGSSSSSMDKARPS 239


>At1g80610.1 68414.m09459 expressed protein
          Length = 211

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 282 RRANALQNELEESRTLLEQADRARRQAEQEL 374
           + +N L+NEL   R LLEQ  RAR  A +++
Sbjct: 143 KESNGLKNELANMRDLLEQ-QRARNTALKKM 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.121    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,128,047
Number of Sequences: 28952
Number of extensions: 95516
Number of successful extensions: 428
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)