Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30132
         (516 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O45662 Cluster: Putative uncharacterized protein srx-29...    42   0.011
UniRef50_Q9P7B3 Cluster: Calcium permease; n=1; Schizosaccharomy...    34   1.7  
UniRef50_A0DPH9 Cluster: Chromosome undetermined scaffold_59, wh...    32   6.8  

>UniRef50_O45662 Cluster: Putative uncharacterized protein srx-29;
           n=1; Caenorhabditis elegans|Rep: Putative
           uncharacterized protein srx-29 - Caenorhabditis elegans
          Length = 292

 Score = 41.5 bits (93), Expect = 0.011
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +2

Query: 191 VTCVLMCLVVYRLDLCRSVTISY*VNSWAYRWENRDRCHHHLWMF*ILYNVDV*LV 358
           +TC++ C V Y    C    + Y  N W++ +EN D C   +W    L+N  + ++
Sbjct: 129 ITCIIFCAVCYEFSKC---FLKYNPNHWSFEFENSDFCDSLIWYSDFLFNTGIDII 181


>UniRef50_Q9P7B3 Cluster: Calcium permease; n=1; Schizosaccharomyces
           pombe|Rep: Calcium permease - Schizosaccharomyces pombe
           (Fission yeast)
          Length = 881

 Score = 34.3 bits (75), Expect = 1.7
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = -2

Query: 458 TPTKSSSAMKL*TLE-IQLEPRFRSMTNKKKTSQKLIKHLHYIKFRTSKDDGDID-RDFP 285
           +P +  S   L + E   L+ R  ++   +    +L K   Y KFR+   D DID  D P
Sbjct: 129 SPLRGQSPASLRSEESFTLKERQNAINKTRAFGMRLWKPALYKKFRSINRDADIDIHDEP 188

Query: 284 IYRPNY*LNN-*WLHC 240
           + RPN  ++N  WL C
Sbjct: 189 LKRPNTSISNVIWLIC 204


>UniRef50_A0DPH9 Cluster: Chromosome undetermined scaffold_59, whole
           genome shotgun sequence; n=4; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_59,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 594

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
 Frame = -2

Query: 395 FRSMTNKKKTSQKLIKHLHYIK-FRTSKDDGDIDRDFPIYRPNY*LNN*WLHC-DTNLTY 222
           FR + N++  S  L+K  ++I+ +  +K + +  ++   YR N  +N+ + H  D+++  
Sbjct: 117 FRILNNRRGKS--LLKEYNHIRVYDNNKWNSETTKELFYYRTN--INHPFYHSQDSSIAN 172

Query: 221 ILQDTSRHTLQHQFNF 174
           + Q+   HTLQ  +NF
Sbjct: 173 LQQNFPLHTLQFNYNF 188


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 412,555,542
Number of Sequences: 1657284
Number of extensions: 6732618
Number of successful extensions: 12559
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12555
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)