Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30132
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    34   0.011
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    30   0.24 
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot...    26   2.9  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   6.7  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    25   6.7  
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    25   8.9  

>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 34.3 bits (75), Expect = 0.011
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = -2

Query: 458 TPTKSSSAMKL*TLE-IQLEPRFRSMTNKKKTSQKLIKHLHYIKFRTSKDDGDID-RDFP 285
           +P +  S   L + E   L+ R  ++   +    +L K   Y KFR+   D DID  D P
Sbjct: 129 SPLRGQSPASLRSEESFTLKERQNAINKTRAFGMRLWKPALYKKFRSINRDADIDIHDEP 188

Query: 284 IYRPNY*LNN-*WLHC 240
           + RPN  ++N  WL C
Sbjct: 189 LKRPNTSISNVIWLIC 204


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = -3

Query: 502 TRKDHIVTLFILILKHLRNLVVP*NCKLWKFN*NPVSEV*PTKKKHP 362
           T+ +++  L  ++++ L   ++P  C +W FN  P+SEV  ++   P
Sbjct: 320 TKSNYVSLLIAMVVRELVFAILPRGC-IWGFNGKPLSEVSVSRSHAP 365


>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
           Sin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 341 HYIKFRTSKDDGDIDRDFP 285
           +Y   R  +DDG++D DFP
Sbjct: 344 NYWNLRIVEDDGELDEDFP 362


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 399 PFPKYDQQKKNIPKTN 352
           PFP YD + + +P TN
Sbjct: 326 PFPFYDAETRTVPPTN 341


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 10  VLYVVERIMLPFI*DYVRNTRKSLLIYILYNKRYIRFHRDATTATQP 150
           V +V E   +P I +  RN+++    +   N  Y++ HR A+ A  P
Sbjct: 85  VHHVEENRDVPSILENYRNSKRKSHNFSSSNTPYLKLHRPASRAGAP 131


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 464 IKTPTKSSSAMKL*TLEIQLEPRFRS 387
           ++TP++SS+ ++L +L I   P F S
Sbjct: 145 LRTPSRSSNTLELHSLPISSSPSFPS 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,806,554
Number of Sequences: 5004
Number of extensions: 31447
Number of successful extensions: 70
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)