Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30132
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0349 + 42939178-42939551,42939752-42939904,42940289-42940982     30   0.96 
02_01_0769 - 5740652-5740759,5740851-5740936,5740994-5741056,574...    27   8.9  

>01_07_0349 + 42939178-42939551,42939752-42939904,42940289-42940982
          Length = 406

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 24/56 (42%), Positives = 32/56 (57%)
 Frame = -2

Query: 506 LNAERSYSHVIHSNIKTPTKSSSAMKL*TLEIQLEPRFRSMTNKKKTSQKLIKHLH 339
           L+   +YSH +HS   T + SSS     T + QL+P+ + MTN KK   KL  HLH
Sbjct: 209 LHLHYTYSHFLHS---TSSSSSST----TTQQQLQPQPQMMTNCKK-KPKL--HLH 254


>02_01_0769 -
           5740652-5740759,5740851-5740936,5740994-5741056,
           5741887-5741935,5742180-5742332
          Length = 152

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 58  VRNTRKSLLIYILYNKRYIRFHRD 129
           V NT+K L  Y+   KRY++ H +
Sbjct: 36  VSNTKKPLFFYVNLAKRYMQLHNE 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,839,987
Number of Sequences: 37544
Number of extensions: 179559
Number of successful extensions: 280
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)