Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30132
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83233-11|CAB05757.2|  292|Caenorhabditis elegans Hypothetical p...    42   3e-04
U32305-18|AAK18852.2|  719|Caenorhabditis elegans Hypothetical p...    27   8.0  

>Z83233-11|CAB05757.2|  292|Caenorhabditis elegans Hypothetical
           protein K06B4.9 protein.
          Length = 292

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +2

Query: 191 VTCVLMCLVVYRLDLCRSVTISY*VNSWAYRWENRDRCHHHLWMF*ILYNVDV*LV 358
           +TC++ C V Y    C    + Y  N W++ +EN D C   +W    L+N  + ++
Sbjct: 129 ITCIIFCAVCYEFSKC---FLKYNPNHWSFEFENSDFCDSLIWYSDFLFNTGIDII 181


>U32305-18|AAK18852.2|  719|Caenorhabditis elegans Hypothetical
           protein B0336.3 protein.
          Length = 719

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 416 EIQLEPRFRSMTNKKKTSQKLIKHLHYIKFRTSKDDGD 303
           E+ ++ R  +    KK + KL+KHLH  K +  K++ D
Sbjct: 524 ELLIKARTSTDETDKKNATKLVKHLHK-KIKACKEEVD 560


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,764,468
Number of Sequences: 27780
Number of extensions: 171212
Number of successful extensions: 298
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)