Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30132
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17690.1 68414.m02190 expressed protein                             29   2.5  
At4g38780.1 68417.m05491 splicing factor, putative strong simila...    27   7.5  
At3g04620.1 68416.m00494 expressed protein                             27   7.5  

>At1g17690.1 68414.m02190 expressed protein
          Length = 754

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
 Frame = -2

Query: 491 SYSHVIHSNIKT-----PTKSSSAMKL*TLEIQLEPRFRSMTNKKKTSQKLIKHLHYIKF 327
           SY  ++HSN K        + SSAM    +   L   F++    KK   K+ KH    + 
Sbjct: 271 SYLDILHSNKKPFYHCGSDEDSSAMDAYLMH-SLNHIFKTRDLVKKNESKIAKHRETSEE 329

Query: 326 RTSKDDGDIDRDF 288
               DDG +D+ F
Sbjct: 330 EILSDDGFLDQGF 342


>At4g38780.1 68417.m05491 splicing factor, putative strong similarity
            to splicing factor Prp8 [Homo sapiens] GI:3661610;
            contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
          Length = 2332

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -2

Query: 341  HYIKFRTSKDDGDIDRD 291
            H+++F   ++DGD+DRD
Sbjct: 2312 HFLQFSKMEEDGDLDRD 2328


>At3g04620.1 68416.m00494 expressed protein
          Length = 164

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 58  VRNTRKSLLIYILYNKRYIRFHRD 129
           V NT+K L  Y+   KRYI+ H +
Sbjct: 42  VSNTKKPLFFYVNLAKRYIQQHNE 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,041,384
Number of Sequences: 28952
Number of extensions: 154109
Number of successful extensions: 240
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)