Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30131
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   1.7  
SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   5.1  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    25   8.9  

>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 266 IKLSHRTSCEVSASKRRVGVCGTAGPRAQACF 361
           ++  H  SC +     R G+CG+A    +A F
Sbjct: 54  LEKQHCESCSIREDSSRHGICGSASSLTEAIF 85


>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 261

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 110 LEEFQVCASRVSV-HYTCIDHDRTHRPQYASLT*KFAHI 223
           L +FQ  + R++  H + ID  R HR    + T  + HI
Sbjct: 178 LNDFQNDSDRIAKNHSSLIDTSRAHRVSLTNATKNYTHI 216


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/32 (25%), Positives = 17/32 (53%)
 Frame = -2

Query: 251  QSKKTYRSMIYVQIFMLVRRIEVCASCHDLCK 156
            +S++ Y + +Y  I +     ++C  C D+ K
Sbjct: 1069 ESRRRYLTNLYEHIVLKAESHQICIICRDIIK 1100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,049,567
Number of Sequences: 5004
Number of extensions: 40157
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)