Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30131
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0050 + 18665251-18665613,18667280-18667744,18668548-186690... 30 1.3
04_04_0523 - 25900802-25902548,25902640-25903037 29 1.7
02_03_0095 + 15144538-15145596 29 2.2
01_06_0036 + 25786530-25786756,25788000-25788076,25788538-257886... 29 2.9
12_01_0282 - 2088302-2089081 28 3.9
11_01_0273 - 2048527-2049297 28 3.9
02_05_0016 - 25004075-25005821,25006394-25006527 28 3.9
11_01_0644 - 5180148-5180308,5181124-5181305,5181348-5181583 27 6.8
05_02_0139 + 7041030-7041188,7041451-7042215,7044133-7044519 27 6.8
10_07_0092 + 12790097-12790143,12790700-12790933,12791728-127917... 27 8.9
03_02_0602 + 9759055-9759223,9759305-9759455,9759548-9759593,975... 27 8.9
03_02_0595 + 9709131-9709688 27 8.9
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 27 8.9
01_07_0198 - 41918276-41918408,41918486-41918841,41919091-419192... 27 8.9
>11_05_0050 +
18665251-18665613,18667280-18667744,18668548-18669037,
18669115-18669143
Length = 448
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 358 TCLCPRPRSPTYPHAPLRRG-NLAGGSMAELDQN 260
+C P P +P PHA +RR + A G ELD +
Sbjct: 16 SCRAPAPATPRPPHAAVRRHLDFAAGDGGELDDD 49
>04_04_0523 - 25900802-25902548,25902640-25903037
Length = 714
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +2
Query: 290 CEVSASKRRVGVCGTAG-PRAQACFQDPYPLNDSPALFAQASDPLPRSXPXLGKGNPLAS 466
C + +++ + T +A+ C +D D A+FA A DP + P + K +
Sbjct: 537 CVTTVARKTLSTSATGDLHKARFCEKDLLQAIDREAVFAYADDPCSANYPLMQKMRAVLI 596
Query: 467 SHAXNTTSRQRS 502
HA +R+
Sbjct: 597 EHALANGEAERN 608
>02_03_0095 + 15144538-15145596
Length = 352
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -3
Query: 376 WVGVLKTCLCPRPRSPTYPHAPLRRGNLAGGSMAELDQNVSSKVKKLIDP 227
W+GV K L R P P PL + +L S+K K +DP
Sbjct: 73 WLGVFKLLLLAAGRGPLNPTHPLHHFVFSASLPVKLRHLASAKPAKGVDP 122
>01_06_0036 +
25786530-25786756,25788000-25788076,25788538-25788625,
25788706-25788786,25788866-25788940,25789048-25789149,
25789589-25789726,25791559-25791585,25791696-25791786,
25792423-25792584
Length = 355
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +2
Query: 281 RTSCEVSASKRRVGVCGTAGPRAQACFQD 367
R+S SAS R G CG GPR Q+ F+D
Sbjct: 25 RSSPVQSASPRPAG-CGCGGPRRQSSFRD 52
>12_01_0282 - 2088302-2089081
Length = 259
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 331 DCGAAGTSMFSGPLPTKRLPCTLCPS 408
DCG G SMF G L K+ P C S
Sbjct: 162 DCGVDGDSMFEGELVVKKEPHKGCVS 187
>11_01_0273 - 2048527-2049297
Length = 256
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 331 DCGAAGTSMFSGPLPTKRLPCTLCPS 408
DCG G SMF G L K+ P C S
Sbjct: 161 DCGVDGDSMFEGKLVVKKEPHKGCVS 186
>02_05_0016 - 25004075-25005821,25006394-25006527
Length = 626
Score = 28.3 bits (60), Expect = 3.9
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +2
Query: 287 SCEVSASKRRVGVCGTAGPR-AQACFQDPYPLNDSPALFAQASDPLPRSXPXLGKGNPLA 463
+C + +K+ + + G A+ C +D D A+FA A DP + P + K +
Sbjct: 448 NCVMQVAKKSLSMNHMGGLHIARFCEKDLLTAIDREAVFAYADDPCSANYPLMQKLRAVL 507
Query: 464 SSHAXNTTSRQR 499
HA +R
Sbjct: 508 IEHALANGDAER 519
>11_01_0644 - 5180148-5180308,5181124-5181305,5181348-5181583
Length = 192
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 449 PYLXWVXTSEGDQTLGQRVQGSRLVGRGP 363
P+ +V +EG G RVQG R +GRGP
Sbjct: 83 PFHCFVGCAEGSDGRGARVQG-RPLGRGP 110
>05_02_0139 + 7041030-7041188,7041451-7042215,7044133-7044519
Length = 436
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 404 GQRVQGSRLVGRGPENMLVPAAPQSHIPPRA 312
G + GS L G G + A+P S +PPRA
Sbjct: 333 GMGLGGSGLEGGGVRKSWMTASPSSPVPPRA 363
>10_07_0092 +
12790097-12790143,12790700-12790933,12791728-12791764,
12791846-12791902,12792422-12792451
Length = 134
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -2
Query: 215 QIFMLVRRIEVCASCHDLCKCSVRSRGSHKLETPPNNA 102
++F + R+ + AS +LC+ S LE PP A
Sbjct: 49 EVFHVNHRVPLAASSPELCQKSAGDPSDSHLEPPPEQA 86
>03_02_0602 +
9759055-9759223,9759305-9759455,9759548-9759593,
9759974-9760033,9760519-9760555,9761268-9761347,
9761413-9761516,9761613-9761673,9762962-9763019,
9763866-9763918,9764357-9765320,9766131-9766185,
9767223-9768786
Length = 1133
Score = 27.1 bits (57), Expect = 8.9
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -3
Query: 346 PRPRSPTYPHAP 311
P+P+SP +PHAP
Sbjct: 674 PKPKSPRFPHAP 685
>03_02_0595 + 9709131-9709688
Length = 185
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 374 PLNDSPALFAQASD-PLPRSXPXLGKGNPLASSHAXNTTSRQRSSP 508
PL++ P L + ++ PLP+ P + P+A +H + T RQ P
Sbjct: 56 PLDEPPLLVIEETEFPLPQ--PSMALSLPMALAHVADKTMRQGLIP 99
>02_03_0180 -
16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = +1
Query: 127 LCEPRERTLHLHRS*QDAQTSIRLTNMKICTYIMDR*VFLLW 252
LC+ R R +HL+ + +++ ++ ++ I+D V +LW
Sbjct: 534 LCQLRRRYVHLYATLLQQASNVDMSEIRQIEKILDTKVIILW 575
>01_07_0198 - 41918276-41918408,41918486-41918841,41919091-41919237,
41919666-41921789,41922150-41922344,41922488-41922568,
41923325-41923414,41923507-41923593,41923914-41923961
Length = 1086
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +2
Query: 251 GANILIKLSHRTSCEVSASKRRVGVCGTAGPRAQACFQDPYPLNDSPALF 400
G N L+ + +S + A VG G+ P A++C + + D P ++
Sbjct: 975 GPNGLLASNGPSSVRIKAGHPEVGKNGSRLPEAESCHEAEWVEQDEPGVY 1024
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,746,850
Number of Sequences: 37544
Number of extensions: 318176
Number of successful extensions: 877
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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