Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30131
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4311| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.56 
SB_11937| Best HMM Match : Flocculin (HMM E-Value=5)                   28   4.0  
SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_51803| Best HMM Match : Ion_trans_2 (HMM E-Value=2.3e-30)           27   9.2  
SB_23465| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.1e-07)           27   9.2  
SB_6954| Best HMM Match : RVT_1 (HMM E-Value=0)                        27   9.2  
SB_26221| Best HMM Match : RVT_1 (HMM E-Value=1.6e-24)                 27   9.2  

>SB_4311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 14/57 (24%), Positives = 30/57 (52%)
 Frame = -3

Query: 181 VRPVMIYASVVYAHAARTNLKLLQIMQSRFFRIAAGAPWYVRNVDLHDDMDLESISK 11
           ++P+M Y   V+      +   + ++Q R  RI A   WY  ++ L +++++E  +K
Sbjct: 7   IQPLMDYCITVWGDNLIEHDNTILLLQKRAARIIAYKKWYDHSMALFEELNIEPFTK 63


>SB_11937| Best HMM Match : Flocculin (HMM E-Value=5)
          Length = 178

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 318 WGYVGLRGRGHKHVFR 365
           WG  GLRGR H+H F+
Sbjct: 2   WGACGLRGRPHQHGFK 17


>SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1462

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -3

Query: 190 LRSVRPVMIYASVVYAHAARTNLKLLQIMQSRFFRI 83
           L  VRP + YAS V+A  A T+++ ++ +Q R  ++
Sbjct: 861 LSIVRPTVGYASEVWAPQAITDMRSVEALQRRATKV 896


>SB_51803| Best HMM Match : Ion_trans_2 (HMM E-Value=2.3e-30)
          Length = 823

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 254 ANILIKLSHRTSCEVSASKRRVG 322
           A++  K++HR++CEV+ S R  G
Sbjct: 707 ADVASKINHRSNCEVTNSNRSSG 729


>SB_23465| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.1e-07)
          Length = 1118

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 165 IMTGRTDLNTPH*HENLHIYHG 230
           I  G+TD + PH H   H+ HG
Sbjct: 55  ISHGQTDNHAPHGHTGAHVSHG 76


>SB_6954| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 943

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -3

Query: 190 LRSVRPVMIYASVVYAHAARTNLKLLQIMQSRFFRI 83
           L  VRP + YAS V+A  A T+++ ++ +Q R  ++
Sbjct: 452 LSIVRPTVGYASEVWAPQAITDMRSVEALQRRATKV 487


>SB_26221| Best HMM Match : RVT_1 (HMM E-Value=1.6e-24)
          Length = 488

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -3

Query: 190 LRSVRPVMIYASVVYAHAARTNLKLLQIMQSRFFRI 83
           L  VRP + YAS V+A  A T+++ ++ +Q R  ++
Sbjct: 395 LSIVRPTVGYASEVWAPQAITDMRSVEALQRRATKV 430


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,346,252
Number of Sequences: 59808
Number of extensions: 348711
Number of successful extensions: 1022
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)