Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30131
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z95122-2|CAB08355.1|  363|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z48230-2|CAA88264.1|  363|Caenorhabditis elegans Hypothetical pr...    27   8.0  
U00056-1|AAN65308.2|  476|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical
           protein F09C3.1 protein.
          Length = 1391

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 112 QIMQSRFFRIAAGAPWYVRNVDLHDDMDLESISKYLQ 2
           QI+QSR F +     +YV+ V L    +LE +   +Q
Sbjct: 443 QILQSRDFYVQENLEFYVKRVALKKPQNLEDLKSTMQ 479


>Z95122-2|CAB08355.1|  363|Caenorhabditis elegans Hypothetical
           protein F42G10.2 protein.
          Length = 363

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 113 EEFQVCASRVSVHYTCIDHDRTHRPQYASL 202
           ++F      V    TC+  DR HRP+Y +L
Sbjct: 295 DDFHYSLPLVKFINTCLTKDRRHRPKYDTL 324


>Z48230-2|CAA88264.1|  363|Caenorhabditis elegans Hypothetical
           protein F42G10.2 protein.
          Length = 363

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 113 EEFQVCASRVSVHYTCIDHDRTHRPQYASL 202
           ++F      V    TC+  DR HRP+Y +L
Sbjct: 295 DDFHYSLPLVKFINTCLTKDRRHRPKYDTL 324


>U00056-1|AAN65308.2|  476|Caenorhabditis elegans Hypothetical
           protein R05H11.1 protein.
          Length = 476

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +2

Query: 233 DKFFYFGANILIKLSHRTSCEVSASKRRVG---VCGTAGPRAQ 352
           D F++ G N+  K+S+ T C +    R +G   + G+  P+ +
Sbjct: 159 DAFYFVGVNVNDKISYETFCTMPHLPRFIGNFRLIGSKSPKVE 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,741,742
Number of Sequences: 27780
Number of extensions: 244493
Number of successful extensions: 582
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)