Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30131
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein...    32   0.20 
At5g18860.1 68418.m02241 inosine-uridine preferring nucleoside h...    27   5.7  
At1g70520.1 68414.m08116 protein kinase family protein contains ...    27   5.7  
At3g14820.1 68416.m01872 GDSL-motif lipase/hydrolase family prot...    27   7.5  
At4g13750.1 68417.m02134 expressed protein                             27   9.9  
At3g01920.1 68416.m00141 yrdC family protein contains Pfam PF013...    27   9.9  

>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 551

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = +1

Query: 286 LLRGFRV*EARGGMW----DCGAAGTSMFSGPLPTK-RLPCTLCPSV 411
           LLRG R  +     W     CG  G + F+ P PTK R PC +C S+
Sbjct: 151 LLRGARYFDPPDAGWVSCYSCGEQGHTSFNCPTPTKRRKPCFICGSL 197


>At5g18860.1 68418.m02241 inosine-uridine preferring nucleoside
           hydrolase family protein contains Pfam profile PF01156:
           Inosine-uridine preferring nucleoside hydrolase
          Length = 890

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 164 DHDRTHRPQYASLT*KFAHISWIDKFFY 247
           ++ RT+  QY  L+ K A  +W D  FY
Sbjct: 304 NYQRTYEAQYVFLSLKIARDTWFDDEFY 331


>At1g70520.1 68414.m08116 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 649

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = +2

Query: 281 RTSCEVSASKRRVGVCGTAGPRAQ----ACFQDPYPLNDSPALFAQASDPLPRSXPXLG 445
           + S +V  S   V + GT GP A      C+ D  PLND    +A+A   LP+  P  G
Sbjct: 61  KISTQVQTSGFGVALTGT-GPDANYGLAQCYGD-LPLNDCVLCYAEARTMLPQCYPQNG 117


>At3g14820.1 68416.m01872 GDSL-motif lipase/hydrolase family protein
           similar to family II lipase EXL3 GI:15054386 from
           [Arabidopsis thaliana]; contains Pfam profile PF00657:
           GDSL-like Lipase/Acylhydrolase
          Length = 311

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = +1

Query: 70  ELRRLSGKNGIALFGGVSSLCEPRERTL 153
           EL  L  KN I LF GV   C P +RTL
Sbjct: 163 ELSELGAKN-IGLFSGVPVGCLPAQRTL 189


>At4g13750.1 68417.m02134 expressed protein
          Length = 2137

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 309 RGAWGYVGLRGRGHKHVFR 365
           +G+ GY+G +G G K VFR
Sbjct: 673 KGSGGYIGKKGIGFKSVFR 691


>At3g01920.1 68416.m00141 yrdC family protein contains Pfam PF01300:
           yrdC domain; similar to Protein yciO.
           (Swiss-Prot:P45847) [Shigella flexneri]; similar to
           Chain A, Crystal Structure Of E. Coli Ycio Length
           (GI:27573707) [Escherichia coli]
          Length = 307

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 476 PRVMRQGGYPYLXWVXTSEGDQTLGQRVQGS 384
           P+V+R+G  P L W+   + + +L Q +  S
Sbjct: 275 PKVIREGKGPILPWMVVEDDESSLRQDLMAS 305


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,197,790
Number of Sequences: 28952
Number of extensions: 228851
Number of successful extensions: 601
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)