Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30128
         (401 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    28   0.62 
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    25   4.4  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    25   5.8  
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    24   7.7  

>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 27.9 bits (59), Expect = 0.62
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 145 YHHPAYFCREAVMRFGLKGGAAVVTIIETLEFISQGG 255
           +  P+ F  E V+   L GG AVV +  TLE I Q G
Sbjct: 87  FKKPSSFTGEDVVELQLHGGTAVVDV--TLEAIKQSG 121


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 327 GRVHSPPGVKWLLEPIDIYN 268
           G +H P  V WLL P DIY+
Sbjct: 236 GPLHDPNTVMWLLRP-DIYS 254


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 205 PHPSNRNALLLHGRNRQGGGTYP 137
           PHP N   +LL G N Q   + P
Sbjct: 97  PHPENSKIVLLMGSNAQNDPSSP 119


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 32  FFVLEFISIHQCVRMKNLE 88
           F +LE    HQCVR+   E
Sbjct: 253 FVILEDCQFHQCVRLPEFE 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,749,213
Number of Sequences: 5004
Number of extensions: 34464
Number of successful extensions: 56
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)