Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30128
         (401 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5999| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.3  
SB_31052| Best HMM Match : 7tm_1 (HMM E-Value=5.8e-14)                 28   3.3  
SB_22302| Best HMM Match : Trefoil (HMM E-Value=0.00016)               27   4.3  
SB_14527| Best HMM Match : SAP (HMM E-Value=1.6e-13)                   27   4.3  
SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   10.0 
SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)             26   10.0 

>SB_5999| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 104 KYRFFFLDFSFLHTGV*I*ILEQRMLSVTTC 12
           K R +F+DF +LH  +      QR+L++ TC
Sbjct: 45  KLRIYFVDFPYLHCSI-----NQRLLTLETC 70


>SB_31052| Best HMM Match : 7tm_1 (HMM E-Value=5.8e-14)
          Length = 283

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 1   MIYVQVVTLSILCSRIYIYTPVCKNEKSRKKNLYF 105
           +++V VV+LS++   +   T    N   RKK++YF
Sbjct: 19  IVFVAVVSLSVVIINLLALTTFLINRHLRKKSVYF 53


>SB_22302| Best HMM Match : Trefoil (HMM E-Value=0.00016)
          Length = 137

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 267 VNAPPTLRYKF*GLNYSYNGCPTLQTETHYCFTAE 163
           VNAP  + Y F  LNY Y+    + T+T Y  T +
Sbjct: 73  VNAPLDIPYCFYPLNYGYSLTSKVATKTGYKLTLQ 107


>SB_14527| Best HMM Match : SAP (HMM E-Value=1.6e-13)
          Length = 347

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 1   MIYVQVVTLSILCSRIYIYTPVCKNEKSRKKNLYFYW 111
           ++Y+   T +++C  IY +TP+ K   S     YF W
Sbjct: 278 IVYLVSFTPNLICCFIYFFTPLDKRGSSMPS--YFLW 312


>SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 196 SNRNALLLHGRNRQGGGTYP 137
           S+ N+  L  +NR+G GTYP
Sbjct: 724 SSDNSFSLEDKNREGPGTYP 743


>SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)
          Length = 578

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 154 PAYFCREAVMRFGLKGGAAVVTIIETLEFISQGGWRIYVVDVY 282
           P+Y     +  +   GG   +T I TLE I +   R +V D Y
Sbjct: 109 PSYLLGHPIEDYDASGGTVYITAIYTLEMICKIISRGFVKDSY 151


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,627,817
Number of Sequences: 59808
Number of extensions: 276900
Number of successful extensions: 660
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)