Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30128
         (401 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC090999-7|AAK26142.1|  438|Caenorhabditis elegans Hypothetical ...    29   1.2  
U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily ass...    28   2.2  
U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily ass...    28   2.2  
Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical pr...    27   3.8  
AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen prot...    27   6.7  
AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen prot...    27   6.7  
EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g...    26   8.8  
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ...    26   8.8  

>AC090999-7|AAK26142.1|  438|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.12 protein.
          Length = 438

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 169 REAVMRFGLKGGAAVVTIIETLEFISQG 252
           R AV++FG+     +V IIET+ F+S G
Sbjct: 136 RTAVVKFGMHFDKVMVAIIETMVFLSLG 163


>U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform b protein.
          Length = 408

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -2

Query: 391 IGRIGYRAPPRVFFFFFCL 335
           IG  G+ APP VF FFF L
Sbjct: 348 IGAFGHEAPPLVFKFFFWL 366


>U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform a protein.
          Length = 406

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -2

Query: 391 IGRIGYRAPPRVFFFFFCL 335
           IG  G+ APP VF FFF L
Sbjct: 346 IGAFGHEAPPLVFKFFFWL 364


>Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical
           protein ZC15.5 protein.
          Length = 597

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 400 RLTIGRIGYRAPPRVFFFFFCLCEWTSSQPTW 305
           R  IG++GYR    +F  F+ +  + S++P W
Sbjct: 360 RRKIGKLGYRRKEELFLVFYMI--FNSNKPLW 389


>AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen protein
           107, isoform a protein.
          Length = 256

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 187 NALLLHGRNRQGGGTYPCG 131
           +A L+ GRN++ GGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen protein
           107, isoform b protein.
          Length = 294

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 187 NALLLHGRNRQGGGTYPCG 131
           +A L+ GRN++ GGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of
           glp-1 protein.
          Length = 1492

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 90  FSRFFILTHWCID-INSRTKNAERHNLYIYH 1
           +   F+ + +  D I+++ +NAE+ N +IYH
Sbjct: 309 YPELFVTSSFLFDVISAKQRNAEKENDFIYH 339


>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
           protein Y53H1C.2a protein.
          Length = 1512

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 90  FSRFFILTHWCID-INSRTKNAERHNLYIYH 1
           +   F+ + +  D I+++ +NAE+ N +IYH
Sbjct: 329 YPELFVTSSFLFDVISAKQRNAEKENDFIYH 359


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,023,552
Number of Sequences: 27780
Number of extensions: 205970
Number of successful extensions: 372
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)