Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30128
         (401 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   2.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   2.3  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   3.0  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   3.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.3  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   6.9  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        20   9.2  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 11/48 (22%), Positives = 24/48 (50%)
 Frame = -3

Query: 156 RVVVPTRADSQEVLPPVKV*ILFSRFFILTHWCIDINSRTKNAERHNL 13
           R+ +  + DS   L  +   + +  F+ + +W +D+NS      R++L
Sbjct: 517 RIFIGPKYDSHHKLIEIPEDLKY--FYEIDNWMLDLNSGLNKITRNSL 562


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 11/48 (22%), Positives = 24/48 (50%)
 Frame = -3

Query: 156 RVVVPTRADSQEVLPPVKV*ILFSRFFILTHWCIDINSRTKNAERHNL 13
           R+ +  + DS   L  +   + +  F+ + +W +D+NS      R++L
Sbjct: 517 RIFIGPKYDSHHKLIEIPEDLKY--FYEIDNWMLDLNSGLNKITRNSL 562


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 245 DINSKVSIIVTTAAPPFKP 189
           D+N  VS+  T   P F P
Sbjct: 147 DLNKVVSVFYTAVIPMFSP 165


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 28  SILCSRIYIYTPVCK 72
           +ILC     YTPVC+
Sbjct: 146 TILCVPFTTYTPVCE 160


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -2

Query: 181 LLLHGRNRQGGGTYPCGLTR--GPTTSKSID 95
           L L+G NR+  G Y C + R  G T   S +
Sbjct: 384 LRLNGINREDRGMYQCIVRRSEGDTAQASAE 414


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -2

Query: 181 LLLHGRNRQGGGTYPCGLTR--GPTTSKSID 95
           L L+G NR+  G Y C + R  G T   S +
Sbjct: 384 LRLNGINREDRGMYQCIVRRSEGDTAQASAE 414


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 55  YTPVCKNEKSRKKNLYFYWW*D 120
           Y P  KN+K+  K+L    W D
Sbjct: 325 YIPKVKNKKAGSKHLLQNTWLD 346


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 82  SRKKNLYFYWW 114
           SRKK L +YW+
Sbjct: 290 SRKKVLPYYWY 300


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,925
Number of Sequences: 438
Number of extensions: 2677
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)