Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30128
         (401 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23640.1 68416.m02973 glycosyl hydrolase family 31 protein si...    27   4.7  
At3g59060.2 68416.m06584 basic helix-loop-helix (bHLH) family pr...    27   6.2  
At3g59060.1 68416.m06583 basic helix-loop-helix (bHLH) family pr...    27   6.2  
At5g02630.1 68418.m00199 expressed protein                             26   8.2  
At3g12810.1 68416.m01598 SNF2 domain-containing protein / helica...    26   8.2  
At1g30400.1 68414.m03716 glutathione S-conjugate ABC transporter...    26   8.2  

>At3g23640.1 68416.m02973 glycosyl hydrolase family 31 protein
           similar to alpha-glucosidase II from SP:Q9F234 [Bacillus
           thermoamyloliquefaciens]; contains Pfam profile: PF01055
           Glycosyl hydrolases family 31
          Length = 991

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
 Frame = -3

Query: 336 YVSGRV----HSPPGVKWLLEPIDIYNVNAPPTLRYKF*GLNYSYN 211
           +V GR+    H P G++WL   IDI          Y+  G    YN
Sbjct: 773 WVGGRILSMTHVPSGIQWLHSRIDINGYEEYSGTEYRSAGCTEEYN 818


>At3g59060.2 68416.m06584 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 444

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 71  RMKNLEKRIYTFTGGRTSCESARVGTTTLPISAV 172
           R KN+E+R+ T +GG + C   R    T+  ++V
Sbjct: 176 RSKNVEERLDTSSGGSSGCSYGRNNKETVSGTSV 209


>At3g59060.1 68416.m06583 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 442

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 71  RMKNLEKRIYTFTGGRTSCESARVGTTTLPISAV 172
           R KN+E+R+ T +GG + C   R    T+  ++V
Sbjct: 176 RSKNVEERLDTSSGGSSGCSYGRNNKETVSGTSV 209


>At5g02630.1 68418.m00199 expressed protein
          Length = 428

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 13  QVVTLSILCSRIYIYTPVCKNE 78
           ++ TLS  C   Y++ P+ KNE
Sbjct: 391 EIATLSFYCLMFYMFRPIEKNE 412


>At3g12810.1 68416.m01598 SNF2 domain-containing protein / helicase
            domain-containing protein similar to transcriptional
            activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
            profiles PF00271: Helicase conserved C-terminal domain,
            PF00176: SNF2 family N-terminal domain
          Length = 2055

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
 Frame = +1

Query: 139  GRYHHPAYFC---REAVMRFGLKGGAAVV 216
            GRY HPAY C   RE + R  L    + V
Sbjct: 1711 GRYRHPAYCCERYRELIQRHILSASDSAV 1739


>At1g30400.1 68414.m03716 glutathione S-conjugate ABC transporter
           (MRP1) identical to glutathione S-conjugate transporting
           ATPase (AtMRP1) [Arabidopsis thaliana] GI:2340166
          Length = 1622

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +1

Query: 154 PAYFCREAVMRFGLKGGAAVVTIIETLEFISQGGWRIYVVDVYGL 288
           P Y     V+     G A V+T++ET  +I +  W +    +Y L
Sbjct: 107 PPYEAFMLVLEAFAWGSALVMTVVETKTYIHELRWYVRFAVIYAL 151


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,374,527
Number of Sequences: 28952
Number of extensions: 193093
Number of successful extensions: 377
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)