Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30120
         (486 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   5.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   5.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   9.2  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -1

Query: 93  MYGMLSSKSHCRRFNKYTVPINV 25
           MY  L ++  C  + ++T  IN+
Sbjct: 485 MYLRLKARRACMNYERFTYKINI 507


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -1

Query: 93  MYGMLSSKSHCRRFNKYTVPINV 25
           MY  L ++  C  + ++T  IN+
Sbjct: 485 MYLRLKARRACMNYERFTYKINI 507


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 377 DQKWNEFKNRC*PSE 333
           +Q+WN++K +  P E
Sbjct: 87  EQRWNDYKLKWNPEE 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,019
Number of Sequences: 438
Number of extensions: 2207
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)