Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30120
         (486 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19085.1 68416.m02424 hypothetical protein                          28   3.8  
At2g42400.1 68415.m05248 expressed protein                             27   6.7  

>At3g19085.1 68416.m02424 hypothetical protein
          Length = 228

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 253 NLRFHVLY*RTRNPRKRAMSRSLLIVTSLG*HLFLN 360
           N  FH+ Y +T  PRKR + R  LI  S   H+ ++
Sbjct: 89  NSDFHLKYGKTLGPRKRNVIRDFLIGISSVRHMIIS 124


>At2g42400.1 68415.m05248 expressed protein
          Length = 450

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 248 NITCDFMYCINALETHGKEQCHGHYSL*P 334
           N +C F   +N+ ETHG++  +G+    P
Sbjct: 130 NFSCGFEDALNSTETHGQQLHYGYEGFDP 158


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,373,934
Number of Sequences: 28952
Number of extensions: 170646
Number of successful extensions: 240
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)