Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30117
         (516 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    44   8e-07
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    40   2e-05
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   2.1  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   2.8  
L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protei...    21   4.9  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   6.5  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   6.5  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   8.6  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   8.6  

>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 44.0 bits (99), Expect = 8e-07
 Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 24/146 (16%)
 Frame = -3

Query: 514 FVQKVNPGQSQITRSSTDFAFFKEDSLPMAEIYKLLDQGKIPT-----DMFNSSDT-MPS 353
           F   +  G + ITR ST+ +     ++P    ++ LD  + PT       FN      P 
Sbjct: 529 FAVSLKQGTNTITRHSTESSL----TIPFERTFRNLDANR-PTGGDALSEFNFCGCGWPQ 583

Query: 352 RLMLPKGTYDGFPFQLFVFVYPY---------EPTPKESEPF----KSVVPDNKPFGYPF 212
            ++LPKGT  G+P  LFV +  Y           T  + + F      + PD +  GYPF
Sbjct: 584 HMLLPKGTEAGYPCHLFVMISNYADDRVEQDTSGTCSDGDTFCGIKDKLYPDRRSMGYPF 643

Query: 211 DRPVLP-----QYFKQPNMFFKKVLV 149
           DR         Q F  PNM  ++V++
Sbjct: 644 DRMPRDGVDTLQQFLTPNMRVQEVVI 669


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 39.5 bits (88), Expect = 2e-05
 Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 18/121 (14%)
 Frame = -3

Query: 514 FVQKVNPGQSQITRSSTDFAFFKEDSLPMAEIYKLLD----QGKIPTDMFNSSDT-MPSR 350
           F   +  GQ+ ITR+S+  +     ++P    ++ LD    QG      FN      P  
Sbjct: 530 FTVNLKQGQNTITRASSQSSV----TIPFERTFRNLDLNRPQGGEELAQFNFCGCGWPQH 585

Query: 349 LMLPKGTYDGFPFQLFVFVYPYEPTPKESEP-------------FKSVVPDNKPFGYPFD 209
           +++PKGT +G   QLFV +  Y+    +                   + PD +  GYPFD
Sbjct: 586 MLIPKGTPEGMKSQLFVMISNYDDDKIDQSTEGVCNDAGSYCGIKDKLYPDRRSMGYPFD 645

Query: 208 R 206
           R
Sbjct: 646 R 646


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 441 SSLKNAKSVDERVI*DWP 494
           S L+NAK VDE ++ + P
Sbjct: 471 SQLRNAKKVDEAILEERP 488


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = -1

Query: 513 SCKRLTLASLR*RVHLLTLHSSKKTLYRWPKSTSSWTKERFLLTCSTPRT 364
           S   + L++ R   +  T H + K +    + T SWT+       S P+T
Sbjct: 26  SATSIDLSTFRVPTYGTTSHPTSKLVPPDERITYSWTEINAFANVSPPKT 75


>L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protein
           protein.
          Length = 46

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 339 LRVHTMDSPSSCLY 298
           +R HT + P SC Y
Sbjct: 27  IRTHTGEKPFSCTY 40


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = -3

Query: 172 MFFKKVLVYHEGELFPYLFNI 110
           ++F +++VY    + P L+N+
Sbjct: 333 LYFCRIMVYLNSAINPILYNL 353


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -1

Query: 195 LSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNA 73
           L   N +T     SW+ +    SP+Y + L     + N NA
Sbjct: 193 LDVINVMTYDFHGSWAGVTAQNSPLYASPLDGEWQRDNLNA 233


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 374 VEHVSRNLSLVQELVDFGHR*RVF 445
           V H   N S VQ+L   GH   VF
Sbjct: 225 VSHKYTNYSAVQDLHRRGHEIAVF 248


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 374 VEHVSRNLSLVQELVDFGHR*RVF 445
           V H   N S VQ+L   GH   VF
Sbjct: 232 VSHKYTNYSAVQDLHRRGHEIAVF 255


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,793
Number of Sequences: 336
Number of extensions: 2759
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)