Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30117
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 29 0.41
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 27 1.7
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 26 2.9
SPAC25B8.15c |||wybutosine biosynthesis protein Tyw3|Schizosacch... 26 2.9
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 25 6.7
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 6.7
SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 8.9
SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz... 25 8.9
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch... 25 8.9
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 25 8.9
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 29.1 bits (62), Expect = 0.41
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 301 VFVYPYEPTPKESEPFKSVVPDNKPFGYP 215
+ VY + P +SE F +VV DN YP
Sbjct: 4194 ILVYQHLPDSSQSETFLNVVTDNSAVDYP 4222
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 27.1 bits (57), Expect = 1.7
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Frame = -3
Query: 514 FVQKVNPGQSQITRSSTDFAFFKEDSLPMAEIYK--LLDQGKIPTDMFNSSDTMPSRLML 341
F+ VNP ++ TR + ++SLPMA Y L + + + P +
Sbjct: 258 FISSVNPLEADDTRETLSEGALVQESLPMAYSYSDTNLVVSRDSFTLTGDDNLFPEGGLR 317
Query: 340 PKGTYDG 320
P T DG
Sbjct: 318 PANTIDG 324
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 2.9
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +3
Query: 213 NG*PNGLLSGTTDLNGSDSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELNMSVG 392
+G + L + + N +++ G+Y N NS N + S SL+G+ S LN S G
Sbjct: 550 SGMASSFLGSSGNNNNNNNSNSGNYN--NNNSGNNNQQHQQSSS-SLQGLASSFLNSSSG 606
>SPAC25B8.15c |||wybutosine biosynthesis protein
Tyw3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 237
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 262 EPFKSVVPDNKPFGYPFDRPVLP 194
E KS VPD P G+P D P+ P
Sbjct: 19 EGLKSSVPDASPKGHP-DSPIFP 40
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 411 SWTKERFLLTCSTPRTLCL 355
SW+K FLLT S RT+ L
Sbjct: 262 SWSKNDFLLTSSADRTVRL 280
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.0 bits (52), Expect = 6.7
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -3
Query: 343 LPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNK 230
L + T D ++ ++FV+ E +P+ E S++ DNK
Sbjct: 2232 LLRKTRDSCYYKRYMFVFDDELSPEWVEAMNSLLDDNK 2269
>SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 76
Score = 24.6 bits (51), Expect = 8.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 126 PIYLTFLTIHQIKRNYNALISKSKRTQTIC 37
P+Y + + R Y L+S + TQTIC
Sbjct: 32 PLYCVVCFVSVLCRLYCILMSAASATQTIC 61
>SPCC1919.03c |||AMP-activated protein kinase beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 298
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 277 SVHTDRRIQTAGRGIHRMY 333
S HT RR QT+G+ H+ Y
Sbjct: 76 SGHTKRRSQTSGKKTHQPY 94
>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -1
Query: 423 KSTSSWTKERFLLTCSTPRTLCLQ 352
K S+ TKE LL C T T C Q
Sbjct: 279 KKHSNLTKEELLLRCLTLTTSCRQ 302
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = -3
Query: 508 QKVNPGQSQITRSSTDFAFFKEDSLPMAEIYKLLDQGKIPTDMFNS 371
Q N Q +T +T ++ +SLP+ + + IPT +N+
Sbjct: 112 QNTNTTQVSLTNGTTTNSYSNTNSLPITDTINGTTELIIPTTSYNN 157
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,116,278
Number of Sequences: 5004
Number of extensions: 45862
Number of successful extensions: 115
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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