Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30117
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13178| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_1509| Best HMM Match : SRR (HMM E-Value=0.22) 29 3.0
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15) 28 5.3
SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2) 27 6.9
SB_26971| Best HMM Match : Peptidase_C5 (HMM E-Value=0.13) 27 6.9
SB_55443| Best HMM Match : Homeobox (HMM E-Value=2.3e-26) 27 6.9
SB_11039| Best HMM Match : Lig_chan (HMM E-Value=1.2) 27 6.9
SB_58782| Best HMM Match : Hormone_5 (HMM E-Value=2.1) 27 9.2
SB_27771| Best HMM Match : SH2 (HMM E-Value=8.6e-16) 27 9.2
SB_1002| Best HMM Match : OTCace_N (HMM E-Value=0) 27 9.2
SB_26487| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_4115| Best HMM Match : Homeobox (HMM E-Value=9.4e-08) 27 9.2
>SB_13178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = -3
Query: 373 SSDTMPSRLMLPKGTYDGFPFQLFV--FVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPV 200
+++T P+ +++P GT ++ + PY P P + P S GYP P
Sbjct: 93 NTETSPNAVIIPPGTDPQLANLVYPPPSMAPYPPGPNQGTPPPSTQQQPGSGGYPMMYPQ 152
Query: 199 LPQYF 185
P Y+
Sbjct: 153 QPGYY 157
>SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -3
Query: 358 PSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYP 215
PS ++ P+ Y G+PFQ YP P P F + P + P YP
Sbjct: 169 PSPVLSPQ-VYRGYPFQ-----YPGTPPPPMYPAFPPIFPSSPPPEYP 210
>SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)
Length = 644
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/54 (22%), Positives = 34/54 (62%)
Frame = -1
Query: 243 FRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRN 82
+ T + ++++++ +L+ S L + ++ ST+++NYS + +LT+ +I ++
Sbjct: 155 YLTLSIKLLNTLSKNYLTLSIKLLNTLSKNSSTLRKNYSTLSRNYLTLRRIPQH 208
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/58 (24%), Positives = 32/58 (55%)
Frame = -1
Query: 243 FRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNAL 70
+ T + V+++++ + + S N S + +T+ +NYS + +LT + +NY+ L
Sbjct: 76 YLTLSIKVLNTLSKNYSTLSKNYLTLSIKVLNTLSKNYSTLSKNYLT---LSKNYSTL 130
>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1894
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -3
Query: 289 PYEPTPKESEPFKSVVPDNKPFGYPFDRPVLPQYFKQPNMFFKKV 155
P+ P + +PF+SV P +PF Q +QP+ F+ V
Sbjct: 509 PFRPGQQPQQPFRSVQPPQQPFRADQQTQQPFQSGQQPHQPFRSV 553
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 289 PYEPTPKESEPFKSVVPDNKPF 224
P+ P + +PF+SV P +PF
Sbjct: 599 PFRPEQQPQQPFRSVQPPQQPF 620
>SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)
Length = 378
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 435 YRWPKSTS-SWTKERFLLTCSTPRTLCLQG*CCLRVH 328
Y WP S + +K +F +C+T QG CLR H
Sbjct: 265 YEWPLVDSITASKAKFYFSCATNENHKEQGTVCLRFH 301
>SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)
Length = 468
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/65 (26%), Positives = 36/65 (55%)
Frame = -1
Query: 243 FRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIS 64
+ T + V+++++ + + S N S + +T+ +NYS + +LT + +NY+ L S
Sbjct: 76 YLTLSIKVLNTLSKNYSTLSKNYLTLSIKVLNTLSKNYSTLSKNYLT---LSKNYSTL-S 131
Query: 63 KSKRT 49
K+ T
Sbjct: 132 KNYST 136
>SB_26971| Best HMM Match : Peptidase_C5 (HMM E-Value=0.13)
Length = 553
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 187 FKQPNMFFKKVLVYHEGELFPY 122
FKQ N++ VLV +G+L+PY
Sbjct: 99 FKQVNVWVNGVLVKAQGDLYPY 120
>SB_55443| Best HMM Match : Homeobox (HMM E-Value=2.3e-26)
Length = 245
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -3
Query: 346 MLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYP 215
+L Y G+PFQ YP P P F + P + P YP
Sbjct: 172 VLSPQVYRGYPFQ-----YPGTPPPPMYPAFPPIFPSSPPPEYP 210
>SB_11039| Best HMM Match : Lig_chan (HMM E-Value=1.2)
Length = 116
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -3
Query: 235 NKPFGYPFDRPVLPQYFKQPNMFFKKVLVYHEGELFPYLFNIPHYTP 95
N F + DRP+L +QP K ++ G + Y F +P +P
Sbjct: 24 NSNFAFISDRPILEYIARQPEYCGKLKVIGGFGSTYGYGFALPLNSP 70
>SB_58782| Best HMM Match : Hormone_5 (HMM E-Value=2.1)
Length = 215
Score = 27.1 bits (57), Expect = 9.2
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Frame = -1
Query: 471 HLLTLHSSKKTLYRWPKSTS-SWTKERFLLTC-STPRTLCLQG*CCLRVHTMDSPSSCL 301
H++ + S L P S ++TC TP LC+ G C + M S S CL
Sbjct: 58 HMIPMFSGSHCLSLTPLSRRFCHVTPHVIVTCFQTPHRLCINGTCMGHMIPMFSGSHCL 116
>SB_27771| Best HMM Match : SH2 (HMM E-Value=8.6e-16)
Length = 896
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 289 PYEPTPKESEPFKSVVPDNKPFGYP 215
P PTP+ S P + P +KP P
Sbjct: 130 PQHPTPQHSPPIRKQTPPSKPHPSP 154
>SB_1002| Best HMM Match : OTCace_N (HMM E-Value=0)
Length = 563
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -2
Query: 452 LQRRLFTDGRNLQALGPRKDSY*HVQLLGHYAFKADAA*GYIRWIPLPAVCIRLSV 285
L +RL+T+ R + L +KD+Y V++ + A +W P + + SV
Sbjct: 8 LVKRLYTNPRRIFGLPEQKDTYVDVEIGSEWTIPKAMAYSRAQWTPFAGMKVFGSV 63
>SB_26487| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = -3
Query: 388 TDMFNSSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPD 236
T N S T S L +GT +P Q YP P + + S +P+
Sbjct: 431 TSQRNRSSTNESYLRASRGTSQPYPSQSQNTAYPESPDTPQPQASSSFLPE 481
>SB_4115| Best HMM Match : Homeobox (HMM E-Value=9.4e-08)
Length = 267
Score = 27.1 bits (57), Expect = 9.2
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = -3
Query: 439 SLPMAEIYKLLDQGKIPTDMFNS-SDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKES 263
SL + L Q T ++ + ++PS + D F Q F P++PTP+
Sbjct: 161 SLAATSLEASLSQSVTATPLYQPLTQSLPSNNLHQSHHEDSFLDQQFADQSPWQPTPESC 220
Query: 262 EPFKSVVPD 236
+ +PD
Sbjct: 221 IEYTQPLPD 229
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,557,962
Number of Sequences: 59808
Number of extensions: 328375
Number of successful extensions: 905
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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