Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30116
         (516 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    24   0.70 
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   8.6  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   8.6  

>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 24.2 bits (50), Expect = 0.70
 Identities = 21/77 (27%), Positives = 39/77 (50%)
 Frame = +2

Query: 128 IRQDNDNIGVEGYNTGYETSNGIKAQETGQLKNIGTENEALEVRGEFAYIGPDGVTYAVT 307
           ++ DN N G EG+ T  E+  G   + T Q++   T+ + +     F + G + V+  V+
Sbjct: 235 LKHDNSNEGGEGFATVEESEIG---KNTKQVEL--TDEKIVAQALLFFFAGFETVSTGVS 289

Query: 308 YVANEGGFQPSAPHIPK 358
           ++A E     + PH+ K
Sbjct: 290 FMAYE---LATNPHVQK 303


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 336 LRHLTFPRLKSTEQAPASSPKIL 404
           + HL   R++   Q+P+SS +IL
Sbjct: 12  VHHLEPHRMQIKPQSPSSSSRIL 34


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 336 LRHLTFPRLKSTEQAPASSPKIL 404
           + HL   R++   Q+P+SS +IL
Sbjct: 12  VHHLEPHRMQIKPQSPSSSSRIL 34


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,752
Number of Sequences: 336
Number of extensions: 1545
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)