Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30116
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    63   1e-12
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   10.0 
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   10.0 
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   10.0 
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   10.0 
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   10.0 
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   10.0 
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   10.0 
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   10.0 
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   10.0 
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   10.0 
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   10.0 

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 63.3 bits (147), Expect = 1e-12
 Identities = 30/66 (45%), Positives = 39/66 (59%)
 Frame = +2

Query: 164 YNTGYETSNGIKAQETGQLKNIGTENEALEVRGEFAYIGPDGVTYAVTYVANEGGFQPSA 343
           Y   +ETSNGI  QE+GQ K +  E   +  +G  +Y  PDG   ++TYVA+E GFQ   
Sbjct: 42  YINNFETSNGISHQESGQPKQVDNETPVVS-QGSDSYTAPDGQQVSITYVADENGFQVQG 100

Query: 344 PHIPKA 361
            HIP A
Sbjct: 101 SHIPTA 106


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 171 PAMKPPTESRLRKPVN 218
           P   PP   RLR P+N
Sbjct: 166 PRFIPPNAYRLRPPLN 181


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 171 PAMKPPTESRLRKPVN 218
           P   PP   RLR P+N
Sbjct: 166 PRFIPPNAYRLRPPLN 181


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 171 PAMKPPTESRLRKPVN 218
           P   PP   RLR P+N
Sbjct: 151 PRFIPPNAYRLRPPLN 166


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 171 PAMKPPTESRLRKPVN 218
           P   PP   RLR P+N
Sbjct: 151 PRFIPPNAYRLRPPLN 166


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 171 PAMKPPTESRLRKPVN 218
           P   PP   RLR P+N
Sbjct: 151 PRFIPPNAYRLRPPLN 166


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 171 PAMKPPTESRLRKPVN 218
           P   PP   RLR P+N
Sbjct: 151 PRFIPPNAYRLRPPLN 166


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 171 PAMKPPTESRLRKPVN 218
           P   PP   RLR P+N
Sbjct: 151 PRFIPPNAYRLRPPLN 166


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 171 PAMKPPTESRLRKPVN 218
           P   PP   RLR P+N
Sbjct: 151 PRFIPPNAYRLRPPLN 166


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 171 PAMKPPTESRLRKPVN 218
           P   PP   RLR P+N
Sbjct: 163 PRFIPPNAYRLRPPLN 178


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 171 PAMKPPTESRLRKPVN 218
           P   PP   RLR P+N
Sbjct: 163 PRFIPPNAYRLRPPLN 178


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 171 PAMKPPTESRLRKPVN 218
           P   PP   RLR P+N
Sbjct: 391 PRFIPPNAYRLRPPLN 406


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,517
Number of Sequences: 438
Number of extensions: 2401
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)