Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30114
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    36   0.005
SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces ...    26   2.9  
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa...    25   5.1  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    25   8.9  
SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|...    25   8.9  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    25   8.9  
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    25   8.9  

>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 35.5 bits (78), Expect = 0.005
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +1

Query: 295 NQDGSVTWREWAPGAHSLHLRGEFNGWDSKSHPFAKKEYGKWEIQIPANPDGSCALKHDS 474
           NQ+     RE   G  +LHL  E   W  K+ P+ K+ + ++  +   +P+ S +L +DS
Sbjct: 46  NQEAYNWLREQIRGLRNLHLLPEEEQWLRKNCPYLKESFYEFMHEFEFDPENSISLNYDS 105

Query: 475 RVQ 483
             +
Sbjct: 106 ETK 108


>SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +1

Query: 136 LEKLLERDGYLKPYEREIRRRYACY 210
           LEK++++D  L+    E+R++Y C+
Sbjct: 85  LEKVIKKDEVLREMLLELRKKYKCW 109


>SPBC776.12c |hsk1||serine/threonine protein kinase
           Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 337 AHSLHLRGEFNGWDSKSHPFAKKEYGKWEIQIPANPD 447
           A  LH     N WD +S    +  +GK   +IP N D
Sbjct: 85  AEDLHYGRYINDWDIQSEVLKESSFGK--EKIPVNED 119


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +1

Query: 361 EFNGWDSKSHPFAKKEYGKWEIQIPANPDGSCALKHDS 474
           EF  WD+    F   EY    +     PD SC   +D+
Sbjct: 311 EFGTWDNGIKAFIPMEYVGTHLLDGVPPDKSCIHNYDN 348


>SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
 Frame = +1

Query: 268 GYKYYGPQFNQDGSVT-WREWAPGAHSLHLR 357
           G+  Y         VT WR W  G  S H+R
Sbjct: 120 GHVVYDTYVRPKEKVTDWRTWVSGVKSFHMR 150


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +1

Query: 361 EFNGWDSKSHPFAKKEYGKWEIQIPANPDGSCALKHDS 474
           EF  WD+    F   EY    +     PD SC   +D+
Sbjct: 311 EFGTWDNGIKAFIPMEYVGTHLLDGVPPDKSCIHNYDN 348


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = +1

Query: 103 AMDPMEVPVPDLEKLLERDG-YLKPYEREIRRRYACYKDIWDRIESWDGGLEAFTKGYKY 279
           A  P ++ + DLE+L E  G   K +E  IRR        W R   W+   + F +    
Sbjct: 34  AFVPPKINITDLEELQEFQGRKRKEFEDAIRRNRLAMGH-WMRYGQWELDQKEFARARSV 92

Query: 280 YGPQFNQDGS 309
           +    + D +
Sbjct: 93  FERALDVDST 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,416,934
Number of Sequences: 5004
Number of extensions: 54492
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)