Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30113
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81115-1|CAB03291.1| 365|Caenorhabditis elegans Hypothetical pr... 222 1e-58
D83738-1|BAA12091.1| 366|Caenorhabditis elegans aldolase Ce1 pr... 222 1e-58
U13070-15|AAC46646.1| 366|Caenorhabditis elegans Hypothetical p... 173 6e-44
U13070-14|AAM22057.1| 259|Caenorhabditis elegans Hypothetical p... 173 6e-44
D83739-1|BAA12092.1| 366|Caenorhabditis elegans aldolase Ce2 pr... 173 6e-44
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p... 29 2.6
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue... 29 2.6
AC024775-8|AAK68458.1| 347|Caenorhabditis elegans Hypothetical ... 28 3.4
Z82053-1|CAB04834.1| 233|Caenorhabditis elegans Hypothetical pr... 28 4.6
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 28 4.6
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 27 6.0
Z82078-7|CAB04947.3| 801|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z68301-8|CAA92626.2| 484|Caenorhabditis elegans Hypothetical pr... 27 8.0
AY008133-1|AAG32086.1| 363|Caenorhabditis elegans heterotrimeri... 27 8.0
AF497514-1|AAM33381.1| 801|Caenorhabditis elegans heavy metal t... 27 8.0
AF497513-1|AAM33380.1| 801|Caenorhabditis elegans heavy metal t... 27 8.0
AF077536-9|AAK31414.1| 363|Caenorhabditis elegans G protein, al... 27 8.0
>Z81115-1|CAB03291.1| 365|Caenorhabditis elegans Hypothetical
protein T05D4.1 protein.
Length = 365
Score = 222 bits (543), Expect = 1e-58
Identities = 105/154 (68%), Positives = 125/154 (81%)
Frame = +1
Query: 55 MSTYFQYPTPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYR 234
M++Y Q+ T ++EL+ IA AIV P KGILAADESTG+M KRL IG+ENTEENRR+YR
Sbjct: 1 MASYSQFLTKAQEDELRSIANAIVTPGKGILAADESTGSMDKRLNSIGLENTEENRRKYR 60
Query: 235 QLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSE 414
QLLF++ A L++ ISGVI+FHET YQK DDG P +LL+++GIIPGIKVDKGVVP+ G+
Sbjct: 61 QLLFTAGADLNKYISGVIMFHETFYQKTDDGKPFTALLQEQGIIPGIKVDKGVVPMAGTI 120
Query: 415 DECTTQGLDDLAQRCAQYKKDGCHFAKWRCVLKI 516
E TTQGLDDL RCAQYKKDG FAKWRCV KI
Sbjct: 121 GEGTTQGLDDLNARCAQYKKDGAQFAKWRCVHKI 154
>D83738-1|BAA12091.1| 366|Caenorhabditis elegans aldolase Ce1
protein.
Length = 366
Score = 222 bits (543), Expect = 1e-58
Identities = 105/154 (68%), Positives = 125/154 (81%)
Frame = +1
Query: 55 MSTYFQYPTPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYR 234
M++Y Q+ T ++EL+ IA AIV P KGILAADESTG+M KRL IG+ENTEENRR+YR
Sbjct: 1 MASYSQFLTKAQEDELRSIANAIVTPGKGILAADESTGSMDKRLNSIGLENTEENRRKYR 60
Query: 235 QLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSE 414
QLLF++ A L++ ISGVI+FHET YQK DDG P +LL+++GIIPGIKVDKGVVP+ G+
Sbjct: 61 QLLFTAGADLNKYISGVIMFHETFYQKTDDGKPFTALLQEQGIIPGIKVDKGVVPMAGTI 120
Query: 415 DECTTQGLDDLAQRCAQYKKDGCHFAKWRCVLKI 516
E TTQGLDDL RCAQYKKDG FAKWRCV KI
Sbjct: 121 GEGTTQGLDDLNARCAQYKKDGAQFAKWRCVHKI 154
>U13070-15|AAC46646.1| 366|Caenorhabditis elegans Hypothetical
protein F01F1.12a protein.
Length = 366
Score = 173 bits (421), Expect = 6e-44
Identities = 87/146 (59%), Positives = 107/146 (73%)
Frame = +1
Query: 79 TPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSSDA 258
T ++EL +IA IV KGILAADESTGT+GKRL I +EN E NR++YRQLLF++
Sbjct: 13 TQAQKDELHQIALKIVQDGKGILAADESTGTIGKRLDAINLENNETNRQKYRQLLFTTPN 72
Query: 259 VLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSEDECTTQGL 438
L+++ISGVIL+ ET +Q D G LL K+GI+PGIK+D GVVPL G+ E TTQGL
Sbjct: 73 -LNQHISGVILYEETFHQSTDKGEKFTDLLIKQGIVPGIKLDLGVVPLAGTIGEGTTQGL 131
Query: 439 DDLAQRCAQYKKDGCHFAKWRCVLKI 516
D LA+R A +KK GC FAKWRCVL I
Sbjct: 132 DKLAERAAAFKKGGCGFAKWRCVLNI 157
>U13070-14|AAM22057.1| 259|Caenorhabditis elegans Hypothetical
protein F01F1.12b protein.
Length = 259
Score = 173 bits (421), Expect = 6e-44
Identities = 87/146 (59%), Positives = 107/146 (73%)
Frame = +1
Query: 79 TPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSSDA 258
T ++EL +IA IV KGILAADESTGT+GKRL I +EN E NR++YRQLLF++
Sbjct: 13 TQAQKDELHQIALKIVQDGKGILAADESTGTIGKRLDAINLENNETNRQKYRQLLFTTPN 72
Query: 259 VLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSEDECTTQGL 438
L+++ISGVIL+ ET +Q D G LL K+GI+PGIK+D GVVPL G+ E TTQGL
Sbjct: 73 -LNQHISGVILYEETFHQSTDKGEKFTDLLIKQGIVPGIKLDLGVVPLAGTIGEGTTQGL 131
Query: 439 DDLAQRCAQYKKDGCHFAKWRCVLKI 516
D LA+R A +KK GC FAKWRCVL I
Sbjct: 132 DKLAERAAAFKKGGCGFAKWRCVLNI 157
>D83739-1|BAA12092.1| 366|Caenorhabditis elegans aldolase Ce2
protein.
Length = 366
Score = 173 bits (421), Expect = 6e-44
Identities = 87/146 (59%), Positives = 107/146 (73%)
Frame = +1
Query: 79 TPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSSDA 258
T ++EL +IA IV KGILAADESTGT+GKRL I +EN E NR++YRQLLF++
Sbjct: 13 TQAQKDELHQIALKIVQDGKGILAADESTGTIGKRLDAINLENNETNRQKYRQLLFTTPN 72
Query: 259 VLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSEDECTTQGL 438
L+++ISGVIL+ ET +Q D G LL K+GI+PGIK+D GVVPL G+ E TTQGL
Sbjct: 73 -LNQHISGVILYEETFHQSTDKGEKFTDLLIKQGIVPGIKLDLGVVPLAGTIGEGTTQGL 131
Query: 439 DDLAQRCAQYKKDGCHFAKWRCVLKI 516
D LA+R A +KK GC FAKWRCVL I
Sbjct: 132 DKLAERAAAFKKGGCGFAKWRCVLNI 157
>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
protein T04H1.4b protein.
Length = 1312
Score = 28.7 bits (61), Expect = 2.6
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 12/70 (17%)
Frame = +1
Query: 85 ELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQ-------DIGV-----ENTEENRRR 228
E++E+ +K++ + + ++ T+ +L+ D+GV E TEEN +R
Sbjct: 747 EVREKNRKLSTEMAEEKSNLSKNEKQLETVNAKLKLAEDLQTDVGVIQQLYEQTEENEKR 806
Query: 229 YRQLLFSSDA 258
Y QL+ SD+
Sbjct: 807 YEQLVSESDS 816
>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical
protein T04H1.4a protein.
Length = 1298
Score = 28.7 bits (61), Expect = 2.6
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 12/70 (17%)
Frame = +1
Query: 85 ELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQ-------DIGV-----ENTEENRRR 228
E++E+ +K++ + + ++ T+ +L+ D+GV E TEEN +R
Sbjct: 733 EVREKNRKLSTEMAEEKSNLSKNEKQLETVNAKLKLAEDLQTDVGVIQQLYEQTEENEKR 792
Query: 229 YRQLLFSSDA 258
Y QL+ SD+
Sbjct: 793 YEQLVSESDS 802
>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
ceRAD50 protein.
Length = 1298
Score = 28.7 bits (61), Expect = 2.6
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 12/70 (17%)
Frame = +1
Query: 85 ELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQ-------DIGV-----ENTEENRRR 228
E++E+ +K++ + + ++ T+ +L+ D+GV E TEEN +R
Sbjct: 733 EVREKNRKLSTEMAEEKSNLSKNEKQLETVNAKLKLAEDLQTDVGVIQQLYEQTEENEKR 792
Query: 229 YRQLLFSSDA 258
Y QL+ SD+
Sbjct: 793 YEQLVSESDS 802
>AC024775-8|AAK68458.1| 347|Caenorhabditis elegans Hypothetical
protein Y41D4A.8 protein.
Length = 347
Score = 28.3 bits (60), Expect = 3.4
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 322 DGTPLVSLLEKKGII--PGIKVDKGVVPLFGSEDECT 426
D +PLVS+L G+I P + + VPLF ED CT
Sbjct: 10 DPSPLVSVL---GLIKSPDLMIGSTEVPLFEEEDMCT 43
>Z82053-1|CAB04834.1| 233|Caenorhabditis elegans Hypothetical
protein T26E3.1 protein.
Length = 233
Score = 27.9 bits (59), Expect = 4.6
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = -3
Query: 502 NATWRSGSRPSCTGRSAGR---GRPDPGWCIRL 413
N G RP+ G AG RP+ GWC+R+
Sbjct: 48 NGNGNGGGRPTNGGCDAGWRRFNRPNGGWCVRV 80
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 27.9 bits (59), Expect = 4.6
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -2
Query: 476 SFLYWAQRWARSSRPWVVHSSSDPNSGTTPLSTLMPGMMPFFSSRETRGVPSSA 315
S L +Q +S P VV SSS +S T ST+ P +S + PS++
Sbjct: 450 STLTLSQSPTPTSTPLVVSSSSSGSSSTVVTSTITPSTQGVPTSTSNQPTPSTS 503
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Frame = +3
Query: 348 GEEGHH--PRHQGRQGCRPAVRIGRRMHHPGSGRPRP 452
G GHH P H G P+ R G HH RP P
Sbjct: 392 GRHGHHGPPHHHHHDGRSPS-RHGHHHHHHHGCRPFP 427
>Z82078-7|CAB04947.3| 801|Caenorhabditis elegans Hypothetical
protein W09D6.6 protein.
Length = 801
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +2
Query: 179 SVCRTSAWRTQRRTVVVIANSYSALTL--CSPRT 274
S+C S WR Q T + +A ++SA L C P T
Sbjct: 117 SLCSFSKWRNQPSTPISLAFAFSAALLIHCIPLT 150
>Z68301-8|CAA92626.2| 484|Caenorhabditis elegans Hypothetical
protein W01B6.3 protein.
Length = 484
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 219 PSSLSPTPIQL*RCALREHLWCDPVPRDPLP 311
P +++ T + RC + WCD PR PLP
Sbjct: 344 PDTMNSTTTLIGRC---DFDWCDDTPRVPLP 371
>AY008133-1|AAG32086.1| 363|Caenorhabditis elegans heterotrimeric G
protein alphasubunit protein.
Length = 363
Score = 27.1 bits (57), Expect = 8.0
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +1
Query: 130 PAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSSDAVLS-ENISGVILFHETL 306
P GI + R+ D+G + +E+ R++ + + VL ISG L+ E
Sbjct: 177 PTTGITEIEFPFKQASLRMVDVGGQRSEQ--RKWIHCFDNVNGVLFIAAISGYNLYDEDE 234
Query: 307 YQKADDGTP 333
+ DDGTP
Sbjct: 235 ENRKDDGTP 243
>AF497514-1|AAM33381.1| 801|Caenorhabditis elegans heavy metal
tolerance factor 1 protein.
Length = 801
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +2
Query: 179 SVCRTSAWRTQRRTVVVIANSYSALTL--CSPRT 274
S+C S WR Q T + +A ++SA L C P T
Sbjct: 117 SLCSFSKWRNQPSTPISLAFAFSAALLIHCIPLT 150
>AF497513-1|AAM33380.1| 801|Caenorhabditis elegans heavy metal
tolerance factor 1 protein.
Length = 801
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +2
Query: 179 SVCRTSAWRTQRRTVVVIANSYSALTL--CSPRT 274
S+C S WR Q T + +A ++SA L C P T
Sbjct: 117 SLCSFSKWRNQPSTPISLAFAFSAALLIHCIPLT 150
>AF077536-9|AAK31414.1| 363|Caenorhabditis elegans G protein, alpha
subunit protein 11 protein.
Length = 363
Score = 27.1 bits (57), Expect = 8.0
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +1
Query: 130 PAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSSDAVLS-ENISGVILFHETL 306
P GI + R+ D+G + +E+ R++ + + VL ISG L+ E
Sbjct: 177 PTTGITEIEFPFKQASLRMVDVGGQRSEQ--RKWIHCFDNVNGVLFIAAISGYNLYDEDE 234
Query: 307 YQKADDGTP 333
+ DDGTP
Sbjct: 235 ENRKDDGTP 243
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,867,219
Number of Sequences: 27780
Number of extensions: 265399
Number of successful extensions: 860
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -