Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30113
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   5.7  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   10.0 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   10.0 
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    21   10.0 

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = -3

Query: 232 DNDDGSPLCSPRRCPANAFPLYRWIRQRRGYP 137
           D   G+P+C       N   L +W   + G+P
Sbjct: 324 DRMQGNPICVQIPWDKNVEALAKWANGQTGFP 355


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = +3

Query: 336  GLPAGEEGHHPRHQGRQGCRPAVRIGRRMHHPGSGRPRPALRP 464
            G   G+ G    H G +G      +G   + P SG P P   P
Sbjct: 1821 GSQYGQYGAPYDHYGSRGSVGRRSVGSARNIPVSGSPEPPPPP 1863


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 300 DPLPEG*RWNASGLPAGEEG 359
           DP P   +  AS + AGEEG
Sbjct: 589 DPXPNTCKVIASSVSAGEEG 608


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 400 LFGSEDECTTQGLD 441
           +FGS +EC    LD
Sbjct: 107 IFGSSEECVALDLD 120


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = +3

Query: 417 RMHHPGSGRPRPALRP 464
           + HHP   RPR    P
Sbjct: 153 KRHHPRYKRPRTTFEP 168


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 400 LFGSEDECTTQGLD 441
           +FGS +EC    LD
Sbjct: 75  IFGSSEECVALDLD 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,492
Number of Sequences: 438
Number of extensions: 3192
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)