Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30111
         (516 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       22   2.8  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   8.6  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   8.6  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    21   8.6  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   8.6  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 30  CLATRRSLQGRN*SLYSQSTCHAPSTKVYTQIKKYF 137
           CLA   SL  +    + Q   H  +TKVY  +K+ +
Sbjct: 121 CLAIPESLVIKLVDYHHQLLGHFGATKVYNSMKREY 156


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 506 SSSILMNYVCTYFLILC 456
           SSS+  NY+ T  ++ C
Sbjct: 59  SSSVFPNYIRTTSMVFC 75


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 506 SSSILMNYVCTYFLILC 456
           SSS+  NY+ T  ++ C
Sbjct: 59  SSSVFPNYIRTTSMVFC 75


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 191 FRK*LGIVVYRWH 153
           FR+ LGI ++ WH
Sbjct: 197 FREDLGINLHHWH 209


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 7   RCDTYVPAVSLH 42
           RC  ++P +SLH
Sbjct: 701 RCGNHLPPISLH 712


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,216
Number of Sequences: 336
Number of extensions: 2335
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)