Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30111
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72860.1 68414.m08427 disease resistance protein (TIR-NBS-LRR...    29   1.9  
At1g05800.1 68414.m00606 lipase class 3 family protein similar t...    29   2.5  

>At1g72860.1 68414.m08427 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1163

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = -3

Query: 262  SIFILSSLKYRC*NRCKKIKA 200
            SI +LSSL+  C N+CKK+K+
Sbjct: 1053 SIEVLSSLRTLCLNKCKKLKS 1073


>At1g05800.1 68414.m00606 lipase class 3 family protein similar to
           DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
           GI:16215706; contains Pfam profile PF01764: Lipase
          Length = 471

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -2

Query: 191 FRK*LGIVVYRWHCKNLSKIFFNLCIDLRR-GSVACALRVETSVSPLERPACSETA 27
           FR   G+    W C   + +   L +D     +++C   +ET ++ + RP CS+ A
Sbjct: 363 FRSLGGVYELPWSCSCYTHVGVELTLDFFDVQNISCVHDLETYITLVNRPRCSKLA 418


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,719,014
Number of Sequences: 28952
Number of extensions: 176717
Number of successful extensions: 342
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)